PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA020887-PA

Common Name

OsI_23702

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bZIP

Protein Properties

Length: 451aa MW: 49345 Da PI: 8.7334

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA020887-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	38.4	2.7e-12	149	177	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka+i++Le+ BGIOSGA020887-PA 149 KTLRRLAQNREAARKSRLRKKAYIQQLET 177 7789***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.0E-9	143	189	No hit	No description
SMART	SM00338	1.2E-5	145	217	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.565	147	176	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.5E-7	149	179	No hit	No description
Pfam	PF00170	2.5E-9	149	177	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	152	167	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.2E-25	226	300	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MAYPSTSGMI QASSSLHGSI TRRNPEGYDM PSDLDQALLL YFDGQEQDKP STQEEPHKPL 60 NFVKETLNIF PSQPMDEEPT PTPKASMSAP PIAGFSRRSP APAAADGRPL TLGKTSKAAF 120 KKEGGSGSGG AMAASASSEL KGPKTPDPKT LRRLAQNREA ARKSRLRKKA YIQQLETGRI 180 RLAHLEQEIQ FTRAQGAFCG AGILSPDAAL FNLEYERWQE AHHQVISRLR AAVEEHRPDG 240 ELQPHVDEAM SHYGVLMAHK ARLVGADPLH LLSGLWKGAV EQCFLWIGGF RPSELIKVVV 300 RHVEPLTEQQ LAAVYSAQQA ARQEEDALDG GLQALLRSLS DVVSSSDAPS SSQQTPPVMY 360 HPSAAAAMAA ASFMGQYGSY SNLQLAMDKL ANLAIFLRQA DEERMRTLHA LRRMLTVRQA 420 ARCFVAVDDY FGRLRALALF WTTTRPHPAA G

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MAYPSTSGMI QASSSLHGSI TRRNPEGYDM PSDLDQALLL YFDGQEQDKP STQEEPHKPL  60
NFVKETLNIF PSQPMDEEPT PTPKASMSAP PIAGFSRRSP APAAADGRPL TLGKTSKAAF  120
KKEGGSGSGG AMAASASSEL KGPKTPDPKT LRRLAQNREA ARKSRLRKKA YIQQLETGRI  180
RLAHLEQEIQ FTRAQGAFCG AGILSPDAAL FNLEYERWQE AHHQVISRLR AAVEEHRPDG  240
ELQPHVDEAM SHYGVLMAHK ARLVGADPLH LLSGLWKGAV EQCFLWIGGF RPSELIKVVV  300
RHVEPLTEQQ LAAVYSAQQA ARQEEDALDG GLQALLRSLS DVVSSSDAPS SSQQTPPVMY  360
HPSAAAAMAA ASFMGQYGSY SNLQLAMDKL ANLAIFLRQA DEERMRTLHA LRRMLTVRQA  420
ARCFVAVDDY FGRLRALALF WTTTRPHPAA G

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.50121	0.0	stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK119909	0.0	AK119909.1 Oryza sativa Japonica Group cDNA clone:002-183-A10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015644001.1	0.0	transcription factor TGAL8 isoform X2
Swissprot	Q69T21	0.0	TGAL8_ORYSJ; Transcription factor TGAL8
TrEMBL	B8B4L8	0.0	B8B4L8_ORYSI; Uncharacterized protein
STRING	OS06T0614100-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12972	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.3	2e-94	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]