PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA020465-PA | ||||||||
Common Name | OsI_21187 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | CPP | ||||||||
Protein Properties | Length: 214aa MW: 23998.9 Da PI: 7.6176 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 34.5 | 4.2e-11 | 6 | 44 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 e+ +C+C +s+C ++YC+Cf ++ +Cs++C+C++C N + BGIOSGA020465-PA 6 ERPKCSCVQSSCTQLYCRCFRSRYFCSDNCNCSGCYNIK 44 5679********************************965 PP | |||||||
2 | TCR | 45.7 | 1.3e-14 | 105 | 143 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 k+ kgC+C+kskC k+YCeCf++ + C+ +CkC++C+N+ BGIOSGA020465-PA 105 KHAKGCSCRKSKCSKLYCECFKNSVGCTAKCKCQECSNS 143 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.2E-5 | 5 | 46 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 30.807 | 6 | 145 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.3E-8 | 9 | 42 | IPR005172 | CRC domain |
SMART | SM01114 | 8.9E-12 | 105 | 146 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 2.8E-11 | 108 | 143 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MANNQERPKC SCVQSSCTQL YCRCFRSRYF CSDNCNCSGC YNIKYYEDAI EEISDMIQMK 60 NPNAFDPRII VSVQDATAAD PQSSTSAISD PKNTSDAMPG NEQRKHAKGC SCRKSKCSKL 120 YCECFKNSVG CTAKCKCQEC SNSFGVKNSE SSNKPDPDDK SATDGLTHEE TTTENITLPG 180 ETWNSDPNKR PRYFIMMIYR PPGSDHFLPK KTQL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC098598 | 1e-130 | AC098598.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1007_H05, complete sequence. | |||
GenBank | AP014961 | 1e-130 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 1e-130 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881429.1 | 1e-141 | protein tesmin/TSO1-like CXC 2 isoform X1 | ||||
TrEMBL | B8AX81 | 1e-157 | B8AX81_ORYSI; Uncharacterized protein | ||||
STRING | OGLUM05G29120.1 | 1e-141 | (Oryza glumipatula) | ||||
STRING | ONIVA10G19520.1 | 1e-141 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12267 | 23 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04850.1 | 2e-21 | Tesmin/TSO1-like CXC domain-containing protein |