PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA020173-PA
Common NameOsI_20601
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TCP
Protein Properties Length: 315aa    MW: 32702.2 Da    PI: 7.4834
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA020173-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP97.32.8e-3075177389
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg....... 88 
                       g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WL+++a+++i++l+ ++++++    +++ + +a++s ++       
  BGIOSGA020173-PA  75 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLINAAQAEIDKLPPLQFPPH----DHDLVAAAASSMAPppfangg 163
                       78*************************************************************99999....222222222111112222333 PP

               TCP  89 .............k 89 
                                    +
  BGIOSGA020173-PA 164 dghhgasassmleD 177
                       44443333333330 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-2676138IPR005333Transcription factor, TCP
PROSITE profilePS5136929.95976134IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MACMAGVDSR GGEALSPAAV ASGRGRSNHE QLKMISNNST NEELGGGGAA AAVASSRHWS  60
ASTESRIVRV SRVFGGKDRH SKVRTVKGLR DRRVRLSVPT AIQLYDLQDR LGLSQPSKVV  120
DWLINAAQAE IDKLPPLQFP PHDHDLVAAA ASSMAPPPFA NGGDGHHGAS ASSMLEDGDK  180
AAGGGGMKAF MSLSNSLGLL NAATMPATLA AHHHHHHHAA AYYAAAESWG NGGNGGHHHD  240
VSHGVSPSAH NSPFPSLLSL APGSHHQFVF YSPEGGGFAV KEAAAEQFPV DSLDHSQGQL  300
TLSSARSFLH SGSQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2081135155Putative transcription factor PCF6
5zkt_B2e-2081135155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.52860.0flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329799620.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00008PBMTransfer from 496250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637968.11e-152transcription factor TCP13
TrEMBLA2Y6G30.0A2Y6G3_ORYSI; Uncharacterized protein
STRINGONIVA05G23460.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.19e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5