PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA019118-PA

Common Name

OsI_18310

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bZIP

Protein Properties

Length: 151aa MW: 16202.2 Da PI: 9.7973

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA019118-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.6	2.6e-13	27	86	4	63
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ +r+ +NRe+ArrsR+RK++++eeL +++ L+a N + ++ + e +k++ e+ BGIOSGA019118-PA 27 ERKRKRMLSNRESARRSRARKQQRLEELIAEAARLQADNARVEAQIGAYAGELSKVDGEN 86 46789999********************************99999999988888877665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.9E-17	24	88	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.0E-10	26	81	No hit	No description
PROSITE profile	PS50217	11.024	26	89	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.5E-9	28	82	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.44E-10	28	80	No hit	No description
PROSITE pattern	PS00036	0	31	46	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MSSPSRRSSS PESNTSGGGG GGYAADERKR KRMLSNRESA RRSRARKQQR LEELIAEAAR 60 LQADNARVEA QIGAYAGELS KVDGENAVLR ARHGELAGRL QALGGVLEIL QVAGAPVDIP 120 EIPDDPLLRP WQPPFAAQPI VATAMADAFQ F

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	40	47	RRSRARKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.3373	0.0	callus\| flower\| leaf\| panicle\| root\| seed\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Roots and shoots of young plants, and basal portion of leaves.

Functional Description ? help Back to Top
Source	Description
UniProt	May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT833673	0.0	CT833673.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA102G21, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639544.1	9e-80	ocs element-binding factor 1
Swissprot	P24068	5e-36	OCS1_MAIZE; Ocs element-binding factor 1
TrEMBL	A0A0E0H8Y0	1e-102	A0A0E0H8Y0_ORYNI; Uncharacterized protein
TrEMBL	A2Y005	1e-102	A2Y005_ORYSI; Uncharacterized protein
STRING	ONIVA05G02010.1	1e-103	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1886	35	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G62420.1	4e-25	basic region/leucine zipper motif 53

Publications ? help Back to Top
Singh K, et al. OCSBF-1, a maize ocs enhancer binding factor: isolation and expression during development. Plant Cell, 1990. 2(9): p. 891-903 [PMID:2152133]