PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA019110-PA

Common Name

OsI_18298

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Trihelix

Protein Properties

Length: 297aa MW: 33141.6 Da PI: 9.2967

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA019110-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	64	3.4e-20	21	85	1	65
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 rW++ e+ a +++r ++++++ ++k++k+lWe+ s+++++ gf r+p qCk+kw+nl +r+k ++ BGIOSGA019110-PA 21 RWSHAETAAFLAIRADLDHSFLSTKRNKALWEAASARLHALGFARTPDQCKSKWKNLVTRFKGTE 85 8*************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.143	14	78	IPR017877	Myb-like domain
Pfam	PF13837	5.1E-15	20	84	No hit	No description
CDD	cd12203	9.42E-19	24	85	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MRGRRCSPTH RRRSSGSASR RWSHAETAAF LAIRADLDHS FLSTKRNKAL WEAASARLHA 60 LGFARTPDQC KSKWKNLVTR FKGTEGAAAV AAAGTDQMQG GQVGGAAARG SSSSFPFHDE 120 LRRIFDARVE RARALERKKV KGKDPDDDHD GGGDGDEDDE EEADQQVDEE DDGASGDTTR 180 AGSKKRRRKA AAAARRTGST GGVEGEVEAM LREFMRRQIE MEERWMEAAE AREAERRARE 240 EEWRTAMVAL GEERLALVRR WREREDAWRA RAEEREERRH QLVAALLAKL GAGDASA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	183	188	KKRRRK

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	116640413	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012613	0.0	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015637590.1	0.0	trihelix transcription factor GT-3b
Refseq	XP_015637591.1	0.0	trihelix transcription factor GT-3b
TrEMBL	A2XZZ1	0.0	A2XZZ1_ORYSI; Uncharacterized protein
STRING	ORUFI05G02060.1	0.0	(Oryza rufipogon)
STRING	OS05T0128000-00	0.0	(Oryza sativa)
STRING	ONIVA05G01910.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12595	31	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	1e-21	Trihelix family protein