PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA018968-PA
Common NameOsI_18121
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 296aa    MW: 33206.6 Da    PI: 10.4203
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA018968-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.0009178200323
                       ET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                       C+  +Cgk+F +   L++H  +H
  BGIOSGA018968-PA 178 CSyeNCGKTFVDVAALRKHAHVH 200
                       77779**************9887 PP
2zf-C2H219.13.6e-06205229123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       y C+   Cgk F ++s LkrH   H
  BGIOSGA018968-PA 205 YICQepGCGKKFVDSSKLKRHHLIH 229
                       889999***************9988 PP
3zf-C2H219.42.8e-06235259123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       + Cp   Cgk Fs   nL++H++tH
  BGIOSGA018968-PA 235 FICPhpGCGKAFSLDFNLRSHLKTH 259
                       789*********************9 PP
4zf-C2H216.32.7e-05265289123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       ++Cp   Cg++F++ s+Lk+H + H
  BGIOSGA018968-PA 265 HVCPfpACGQRFTSDSQLKSHVKGH 289
                       789999***************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-11173200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.406176205IPR007087Zinc finger, C2H2
SMARTSM003550.016176200IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280178200IPR007087Zinc finger, C2H2
SuperFamilySSF576674.19E-8179229No hitNo description
Gene3DG3DSA:3.30.160.604.4E-13202227IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0012205229IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.066205234IPR007087Zinc finger, C2H2
PROSITE patternPS000280207229IPR007087Zinc finger, C2H2
SuperFamilySSF576677.76E-13216269No hitNo description
Gene3DG3DSA:3.30.160.602.1E-18228260IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0011235259IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.822235264IPR007087Zinc finger, C2H2
PROSITE patternPS000280237259IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-7263289IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.014265289IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.972265294IPR007087Zinc finger, C2H2
PROSITE patternPS000280267289IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEYAAPAGAG AGGYYYYPPS QQHKPRRPPR PAARWVKHWI PQDLATSSGK CALYKWVRGN  60
LLFSSFNFPP KLFCVAQRSF VGQRAPKSFV KPKIVKAPIS LGHLGAQILG ISHFRGGFYK  120
IPQKRFPGEK LKLVTLSFPL MRCGARGNGV TRNLKDGKAV PEPEAVKPVF FTEILFLCSY  180
ENCGKTFVDV AALRKHAHVH NERQYICQEP GCGKKFVDSS KLKRHHLIHT GQKDFICPHP  240
GCGKAFSLDF NLRSHLKTHA LENYHVCPFP ACGQRFTSDS QLKSHVKGHE KLEISL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C1e-341782918119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.153750.0callus| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329886530.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1034440.0AK103444.1 Oryza sativa Japonica Group cDNA clone:J033129E14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA2XZG80.0A2XZG8_ORYSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.24e-58C2H2 family protein