PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA018059-PA
Common NameOsI_19954
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 646aa    MW: 68809.1 Da    PI: 7.7042
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA018059-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.71.1e-12170231162
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                       e++ +r+ r+++NRe+A+ sRqRKk ++eeLeekvk++ +   +L ++++    e a+l+++
  BGIOSGA018059-PA 170 EEDKRRAARLMRNRESAQLSRQRKKRYVEELEEKVKSMHSVINDLNSRISFVVAENATLRQQ 231
                       5677899*********************************9999***999888888888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-14169234IPR004827Basic-leucine zipper domain
PfamPF001701.1E-10171232IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.979172232IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.3E-15174233No hitNo description
SuperFamilySSF579591.69E-11174232No hitNo description
CDDcd147042.21E-20175226No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MAEPALLDPT AAFDLRLYPA HLFDHELPLA GGGGGDDDDD LPLDGLEFDL PGDFSVEDFL  60
LRSPERDDSG EGSAAGSGPT ASPSSSPTTS ASNSAVANGS GGEVKHEESD EGRSGGGDPK  120
WSLKRKQASP GPSSDAAKCR RSGDGDVSPS ASASRTAVDS DEGGTVCEEE EDKRRAARLM  180
RNRESAQLSR QRKKRYVEEL EEKVKSMHSV INDLNSRISF VVAENATLRQ QLSGGSVNCP  240
PPGVYPPAPI PGMHFPWMPG YAMRPPGSHV PLVPIPRLKP QQPVPSSKVV KKPESKKTVE  300
NKSKSKTKTK KVASVSLLGL LLIMLVFGAF IPGFNHNFGM CGQSDNAMFR NFGQSHARVL  360
SVSSQDKSSL NNSDMIGVDV GKMTGNTDGP GKKHQPAHNS SEILPALLYV PRNGKHVKIN  420
GNLIIHSVLA SEKAVAHKAS KDDSDQSARD HKETSVAIAR YLSLPGKDVN RQETSSADGP  480
LPQWFREGME GPILNSGMCS EVFQFDISTA SSNPGGIIPA SPVVNSSSVN ATEKIPAHSA  540
AYHGKLKNRR VMYNEAIPLT GKTANNTEPF NRTSESSSKL PDSKPASSVV VSVLADPREA  600
GNGDGDPRVS PKPLSKIFVV VLVDGVRYVT YSCTLPFKSS SPHLVN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172194KRRAARLMRNRESAQLSRQRKKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.55350.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166322360.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaf blade, and at lower levels in roots, leaf sheaths, flowers and seeds. {ECO:0000269|PubMed:22084314}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269|PubMed:22050533, ECO:0000269|PubMed:22084314}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000269|PubMed:22084314}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0731420.0AK073142.1 Oryza sativa Japonica Group cDNA clone:J033024D10, full insert sequence.
GenBankCT8320400.0CT832040.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA222G20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640085.10.0bZIP transcription factor 39
SwissprotQ6AU900.0BZP39_ORYSJ; bZIP transcription factor 39
TrEMBLA2Y4M90.0A2Y4M9_ORYSI; Uncharacterized protein
STRINGOS05T0411300-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82283545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40950.19e-83bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F
    A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response.
    Plant Cell Physiol., 2012. 53(1): p. 144-53
    [PMID:22084314]
  4. Ohta M, et al.
    Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants.
    J. Exp. Bot., 2013. 64(18): p. 5429-41
    [PMID:24153418]
  5. Cheng Q, et al.
    An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice.
    Plant Biol (Stuttg), 2015. 17(2): p. 419-29
    [PMID:25255693]