PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA017810-PA
Common NameOsI_20434
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family G2-like
Protein Properties Length: 224aa    MW: 24959.2 Da    PI: 6.5223
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA017810-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.18.3e-331266155
           G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                      k+rlrWt++LH+rFv+a++qLGG+++AtPk +l +m+v+g+t++hvkSHLQkYRl
  BGIOSGA017810-PA 12 KQRLRWTSDLHNRFVDAIAQLGGPDRATPKGVLTVMGVPGITIYHVKSHLQKYRL 66
                      79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.742969IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-311067IPR009057Homeodomain-like
SuperFamilySSF466897.7E-171166IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-251267IPR006447Myb domain, plants
PfamPF002492.0E-71465IPR001005SANT/Myb domain
PfamPF143791.8E-2498144IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGSPANPAGS GKQRLRWTSD LHNRFVDAIA QLGGPDRATP KGVLTVMGVP GITIYHVKSH  60
LQKYRLAKYI PESPAEGSKD EKKDSSDSLS NTDSAPGMQI NEALKMQMEV QKRLHEQLEV  120
QRQLQLRIEA QGKYLQMIIE EQQKLGGSLK ACEEQKLPHS PPSLDDYPDS MQPSPKKPKM  180
DNLSPDSVRD VTQSDFESHL IGPWDQEAAF RVDEFKADPG LNKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-231169159Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-231169159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-231169159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-231169159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-231169159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-231169159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-231169159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-231169159Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.139780.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329793300.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0619870.0AK061987.1 Oryza sativa Japonica Group cDNA clone:001-043-B07, full insert sequence.
GenBankAK0693060.0AK069306.1 Oryza sativa Japonica Group cDNA clone:J023012H08, full insert sequence.
GenBankCT8300690.0CT830069.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA051M08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639152.11e-165myb family transcription factor PHL7
RefseqXP_015639153.11e-165myb family transcription factor PHL7
RefseqXP_015639154.11e-165myb family transcription factor PHL7
RefseqXP_015639155.11e-165myb family transcription factor PHL7
SwissprotQ9SJW04e-75PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A0E0A1151e-164A0A0E0A115_9ORYZ; Uncharacterized protein
TrEMBLB8AZI41e-164B8AZI4_ORYSI; Uncharacterized protein
TrEMBLB9FKW81e-164B9FKW8_ORYSJ; Uncharacterized protein
TrEMBLQ6F3351e-164Q6F335_ORYSJ; Os05g0491500 protein
STRINGOGLUM05G22410.11e-165(Oryza glumipatula)
STRINGOS05T0491500-021e-165(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79133343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.15e-56G2-like family protein