PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA017461-PA
Common NameOsI_21199
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 262aa    MW: 27811.8 Da    PI: 8.6054
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA017461-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.21.9e-13112156347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +W+++E+ l++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qk+
  BGIOSGA017461-PA 112 PWSEQEHRLFLAGLEKLGKGDWRGISRSFVTTRTPTQVASHAQKF 156
                       8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.439105161IPR017930Myb domain
SuperFamilySSF466892.32E-16106162IPR009057Homeodomain-like
TIGRFAMsTIGR015576.3E-17108159IPR006447Myb domain, plants
SMARTSM007173.8E-10109159IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-10109152IPR009057Homeodomain-like
CDDcd001674.56E-9112157No hitNo description
PfamPF002492.0E-10112155IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MARRCSGDYS TAGQRAGEEG GAGLRLFGVQ LHAAAASSPA SYLHKSYSMD CLRLQVSSPS  60
SLQSSSSSPS PLTSSLLLSI DEGCERPAAD GYLSDGPHGA AATMRERKKG VPWSEQEHRL  120
FLAGLEKLGK GDWRGISRSF VTTRTPTQVA SHAQKFFLRH NSAAKKTNNK RRSSLFDMVQ  180
DCDSGGRSLA SSDPATRCNN NISASLSLQV SHHKSGDSAW PSSETPSVSE AQQGHGYGTS  240
HHCSPLDLEL GMSLSTTPSI GT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.545361e-161leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329907511e-161
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0598130.0AK059813.1 Oryza sativa Japonica Group cDNA clone:006-205-B05, full insert sequence.
GenBankAK0685950.0AK068595.1 Oryza sativa Japonica Group cDNA clone:J013154K05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638259.11e-159transcription factor MYBS3-like
TrEMBLB8AX930.0B8AX93_ORYSI; Uncharacterized protein
STRINGOS05T0589400-011e-158(Oryza sativa)
STRINGONIVA05G29740.11e-158(Oryza nivara)
STRINGORGLA05G0241200.11e-158(Oryza glaberrima)
STRINGOBART05G27750.11e-158(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49323066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-38MYB_related family protein