PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA017200-PA | ||||||||
Common Name | OsI_17552 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 439aa MW: 45955.4 Da PI: 7.5731 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.1 | 4.3e-05 | 331 | 368 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +++eYIk L BGIOSGA017200-PA 331 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 368 677888999*******998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.935 | 319 | 368 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.8E-11 | 329 | 382 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.66E-5 | 329 | 372 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.2E-8 | 329 | 377 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MGDHQMMHAA PAAMYNGGGG GGTTSSHGVW WSNAVGVPAA ATCSTTTELA GYTAWSSALA 60 AGYDGMVADN GGKQAKSTTT ASSESPGNNS SVTFQEPASI PDPAAVAAVP QPGLAGFTDW 120 TQPFMNNGAG LHEFLQDGHH DMSASSLMNH SSNNLALQQA GHHHELLSSF GSDLLLSPTS 180 PYGGFQSSLL RSLMEPTAKQ QQQQPALAGL QQYHQYQQQM GHTPAAAAKF AQAVGARDSL 240 QFTNDAPFWN PSAGFGMPAA VAVAAAAAQD QASVRSAKRS SPAPPRAAAT LALKTAMEGV 300 GDSSSVITKK ETAFKKPRLE TPSPLPTFKV RKEKLGDRIT ALQQLVSPFG KTDTASVLHE 360 TIEYIKFLHD QVGALSAPYL KNGAHQVPHL KNSSPDKSKH GEISLKGRGL CLVPISSTFA 420 VASEVPVELW TPFGANFIR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.25006 | 0.0 | flower| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32979390 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT832701 | 0.0 | CT832701.2 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI224H06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633969.1 | 0.0 | transcription factor bHLH112 | ||||
TrEMBL | A2XXX7 | 0.0 | A2XXX7_ORYSI; Uncharacterized protein | ||||
STRING | OBART04G24870.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2216 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.1 | 2e-48 | bHLH family protein |