PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA016936-PA
Common NameOsI_17013
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family G2-like
Protein Properties Length: 307aa    MW: 32856.5 Da    PI: 8.5463
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA016936-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.21.2e-302376255
           G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                      prlrWt eLH +Fv+a+e LGG++kAtPk il+lm+vkgLt++hvkSHLQ+YR 
  BGIOSGA016936-PA 23 PRLRWTGELHCSFVQAIEFLGGQDKATPKLILQLMGVKGLTISHVKSHLQMYRC 76
                      8****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.2E-291977IPR009057Homeodomain-like
SuperFamilySSF466891.61E-152176IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-232376IPR006447Myb domain, plants
PfamPF002492.0E-62475IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGSGGGGCGR NGAVRQYIRS KVPRLRWTGE LHCSFVQAIE FLGGQDKATP KLILQLMGVK  60
GLTISHVKSH LQMYRCSRLV SHGTGRRSEM QPQLQRKHSC GADEQVPREF LCPPLKRTRM  120
GTEATYKGMQ GSQGISEMRT TGTQYCIDDY MQAMAMERRI KEEGLRWQRD AAAAAAAADG  180
GAAASNLQTV GCSVQESDPF KIIKPEVHHL GPVLKLQCSK VENSGFISSS TGTAARDQPE  240
PPPLEKCSLS LSLGPDPKCM PAIASSPSES SCILSSSSRS FSDCSGNSGC LVAPGVNLEL  300
SMSICGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-172478357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-172478357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-172478357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-172478357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.540930.0callus| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329870580.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1018490.0AK101849.1 Oryza sativa Japonica Group cDNA clone:J033069K05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634437.10.0putative Myb family transcription factor At1g14600
TrEMBLA2XWI40.0A2XWI4_ORYSI; Uncharacterized protein
STRINGONIVA04G20480.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29663583
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.15e-29G2-like family protein