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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
BGIOSGA016569-PA |
| Common Name | OsI_16216 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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| Family |
C2H2 |
| Protein Properties |
Length: 331aa MW: 36398.4 Da PI: 10.1755 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| BGIOSGA016569-PA | genome | RIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 14.7 | 8.6e-05 | 106 | 123 | 3 | 20 |
ETTTTEEESSHHHHHHHH CS
zf-C2H2 3 CpdCgksFsrksnLkrHi 20
C Cg++F+ +++L rH
BGIOSGA016569-PA 106 CRVCGRRFRARDTLLRHF 123
*****************6 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 331 aa
Download sequence Send
to blast |
MFPPFSHLRR RLLAAIPNPN LLLRPSRSLS TSTTPATRAP ATPVDVLWDL AASRPPSTLP 60
LYDAAVRLHL AATSFGRVRL SAAFVHPGHR LPAPSPSAAA AAVHLCRVCG RRFRARDTLL 120
RHFDAIHARE HAKRLARIDS SRGDRRVRLA AALSLKLSKY EKAARELTAA ADPCSPADDL 180
RRARVAVELS PTPSVSLLER AHEVLDGGSV RCLMLVSARD ELAPLLRLAR EKGVRSVVVG 240
GESGPARWAD VGFSWAEVIA GKARKAAPSV SGKWRDRDVL KRLEWRYDDD DEEVVFEEDG 300
DEDGIDELTR NSKGKPWWKL ESDGEDSSAC R
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AL606653 | 0.0 | AL606653.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0048E02, complete sequence. |
| GenBank | AL663017 | 0.0 | AL663017.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060P14, complete sequence. |
| GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
