PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA015991-PA | ||||||||
Common Name | OsI_15056 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | CPP | ||||||||
Protein Properties | Length: 177aa MW: 19121.5 Da PI: 8.6737 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 23.1 | 1.5e-07 | 98 | 123 | 15 | 40 |
TCR 15 kkYCeCfaagkkCseeCkCedCkNke 40 YC Cf+a +Cs++C+C++CkN+e BGIOSGA015991-PA 98 ESYCLCFSAYGYCSQNCRCTNCKNRE 123 58**********************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 13.045 | 89 | 177 | IPR005172 | CRC domain |
Pfam | PF03638 | 6.9E-5 | 98 | 123 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MAAVNHGTDA SRAGPPYASA PRGNQVAPAS GHDSGDGSTF ASGGAPPHPH PPLVPPSPRL 60 LSPAASKQGS TAGVALKRDE KEKGGICHFK KRARGKQESY CLCFSAYGYC SQNCRCTNCK 120 NREYYEDFVE ERVDMIKMKN PRAFDPKIVR VQDASEIEPQ SSNAVLMPEV QVPRTFV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012612 | 1e-145 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8AR64 | 1e-128 | B8AR64_ORYSI; Uncharacterized protein | ||||
STRING | OBART04G02690.1 | 1e-71 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12267 | 23 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04850.1 | 2e-11 | Tesmin/TSO1-like CXC domain-containing protein |