PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA015954-PA | ||||||||
Common Name | OsI_14979 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | TCP | ||||||||
Protein Properties | Length: 109aa MW: 10830 Da PI: 3.9921 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 49.9 | 1.2e-15 | 4 | 83 | 30 | 89 |
TCP 30 arfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssasnsssg................k 89 a +F+L++e G+ +d++ti+ Ll+qa+p+i+++tgt+ +++++ +sss++a++ +g + BGIOSGA015954-PA 4 AGVFQLTREFGHSTDGETIDCLLRQAEPSIIAATGTGVTPEEAPpapvAIGSSSVAAAAAAAGhggafvhvpyytpllmQ 83 679*********************************66666333332222222222221111133445555554444441 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 15.349 | 1 | 36 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 5.1E-10 | 4 | 49 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MVPAGVFQLT REFGHSTDGE TIDCLLRQAE PSIIAATGTG VTPEEAPPAP VAIGSSSVAA 60 AAAAAGHGGA FVHVPYYTPL LMQPPNADEP PMASAASASG TTAADENNN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.53807 | 1e-161 | callus| flower| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32985389 | 1e-161 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings and leaves, mostly in the lower region rich in dividing cells. {ECO:0000269|PubMed:9338963}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012612 | 1e-163 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003581062.1 | 1e-42 | transcription factor PCF1 | ||||
Swissprot | O23875 | 3e-42 | PCF1_ORYSJ; Transcription factor PCF1 | ||||
TrEMBL | A2XQQ9 | 4e-71 | A2XQQ9_ORYSI; Uncharacterized protein | ||||
STRING | OPUNC04G03490.1 | 1e-46 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14172 | 26 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08330.1 | 1e-15 | TCP family protein |