PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA015069-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ZF-HD
Protein Properties Length: 277aa    MW: 29772.4 Da    PI: 11.5364
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA015069-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer88.28.2e-282370557
       ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                      +YkeC++NhAa++Gg+a+DGCgE+mp+     ++++lkCaACgCHR+FHRr  
  BGIOSGA015069-PA 23 KYKECMRNHAAAMGGQAFDGCGEYMPA-----SPDSLKCAACGCHRSFHRRAA 70
                      7*************************9.....799****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-202368IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.5E-222369IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.4E-242369IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.0482469IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MMDHLSLVPY EGGSAGGGGG GGKYKECMRN HAAAMGGQAF DGCGEYMPAS PDSLKCAACG  60
CHRSFHRRAA AGIGGGPVFF RPPPPPQPHS HHAALQGFLP SSVPAPAPPP QLALPYHAVP  120
AAAWHHAAAA AAGRAGSETP PRMDDFGXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XGSFHLLRPG REIFFFPEIW LSPTSCRYSS AEVFVGIWRR IMRRPRRRRQ RGGGGGASWG  240
IERLARVHGS PRRVASASVS SVSSRSRGAR GGFLSRF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222227RRPRRR
2223230RPRRRRQR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.612270.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154584830.0
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635194.13e-99zinc-finger homeodomain protein 8
SwissprotQ7X7N32e-99ZHD8_ORYSJ; Zinc-finger homeodomain protein 8
TrEMBLA0A0P0WAN46e-98A0A0P0WAN4_ORYSJ; Os04g0434500 protein
STRINGOS04T0434500-001e-98(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136492225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.19e-18zinc finger homeodomain 1