PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA014650-PA
Common NameH0502G05.4, OsI_016210, YAB5
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family YABBY
Protein Properties Length: 265aa    MW: 28085.6 Da    PI: 7.7843
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA014650-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY209.41.3e-64262176170
             YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.......................lleel 75 
                         eq+Cyv+CnfC+tilav vP +slfk+vtvrCGhC++llsvnl+      aa+   +  + +                        ++e+ 
  BGIOSGA014650-PA  26 EQEQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPFGQAllsptsphglldevpsfqapaslMTEQA 118
                       579*******************************************998665555554555555566668999*9999999998876544444 PP

             YABBY  76 kveeenlksnvekeesastsvssekl......senedeevpr.vppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWa 161
                         + ++++s +++     ++ +++++       ++++ + p+ +p ++r  ekrqrvPsaynrfik+eiqrikasnPdi+hreafsaaaknWa
  BGIOSGA014650-PA 119 SPNVSSITSSNSSCA---NNAPATSMasaankATQREPQQPKnAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWA 208
                       444444433332222...22222222233323333333444415569********************************************** PP

             YABBY 162 hfPkihfgl 170
                       hfP+ihfgl
  BGIOSGA014650-PA 209 HFPHIHFGL 217
                       *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.3E-7126217IPR006780YABBY protein
SuperFamilySSF470952.75E-7159210IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.8E-4169209IPR009071High mobility group box domain
CDDcd000848.14E-5171207No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSSAPETFSL DHLSQHQQQQ PPPLAEQEQL CYVHCNFCDT ILAVGVPCSS LFKTVTVRCG  60
HCANLLSVNL RGLLLPAAAS TANQLPFGQA LLSPTSPHGL LDEVPSFQAP ASLMTEQASP  120
NVSSITSSNS SCANNAPATS MASAANKATQ REPQQPKNAP SANRTSEKRQ RVPSAYNRFI  180
KDEIQRIKAS NPDITHREAF SAAAKNWAHF PHIHFGLMPD QGLKKTGIQS QDGAGECMLF  240
KDGLYAAAAA AAAATAASSM GVTPF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.62190.0callus| flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1242710350.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf primordia, young leaves, floret meristems, floral organ primordia, stamens and carpels. Does not show polar expression pattern. {ECO:0000269|PubMed:17216490, ECO:0000269|PubMed:17351053}.
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740170.0AB274017.1 Oryza sativa Japonica Group OsYABBY5 mRNA for OsYABBY5 protein, complete cds.
GenBankAK0702050.0AK070205.1 Oryza sativa Japonica Group cDNA clone:J023042I23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634596.10.0protein YABBY 5
SwissprotQ01JG20.0YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF00.0YAB5_ORYSJ; Protein YABBY 5
TrEMBLA0A0D9ZNK40.0A0A0D9ZNK4_9ORYZ; Uncharacterized protein
STRINGOS04T0536300-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-56YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]