PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA014412-PA | ||||||||
Common Name | OsI_17269 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | Trihelix | ||||||||
Protein Properties | Length: 277aa MW: 32228 Da PI: 7.4606 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 81.8 | 9.6e-26 | 21 | 106 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrg....klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W qe+++Li+ar eme+++ ++ +++k+lWe+vs+++rerg++r+++qCk+kw+nl +ryk ++++ ++ ++cp+fd+l+ BGIOSGA014412-PA 21 QWGAQETRELIAARGEMERESAAAaaarRSAKTLWEAVSARLRERGYRRTAEQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFDELH 106 7********************975223369*************************************99999974....678******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0047 | 18 | 84 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.62E-16 | 20 | 89 | No hit | No description |
Pfam | PF13837 | 2.9E-22 | 21 | 107 | No hit | No description |
PROSITE profile | PS50090 | 7.282 | 22 | 82 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0016592 | Cellular Component | mediator complex |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MEPGCGEGGG GGGGRDERVP QWGAQETREL IAARGEMERE SAAAAAARRS AKTLWEAVSA 60 RLRERGYRRT AEQCKCKWKN LVNRYKGKET SDPENGRQCP FFDELHAVFT ERARTMQQQL 120 LESESGPSVK KKLKRPSGDL SSEDSDDEED GGGDSGDEKP IRSRKRKIAD KRQQSQRMAE 180 KSRTSISSTH ELLQDFLVQQ QRMDIQWHEM MERRSQERIV FEQEWRQSMQ KLEQERLMLE 240 HTWMEREEQR RMREEARAEK RDALLTTLLN KVLQEDL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.27946 | 0.0 | stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32990929 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CR855228 | 0.0 | CR855228.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: B0403H10-OSIGBa0105A11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880753.1 | 0.0 | uncharacterized protein LOC4336887 | ||||
TrEMBL | A2XX67 | 0.0 | A2XX67_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q01HT1 | 0.0 | Q01HT1_ORYSA; B0403H10-OSIGBa0105A11.17 protein | ||||
STRING | ORUFI04G25870.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10688 | 30 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38250.1 | 1e-27 | Trihelix family protein |