PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA014036-PA
Common NameOsI_18032
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ARF
Protein Properties Length: 525aa    MW: 56829.1 Da    PI: 5.7391
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA014036-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3789.8e-25125229299
                       EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        k+lt+sd+++ g +++p+ +a+++       + ++ +s  lt+ d++g sWe+++iyr++++r++lt+GW++Fv+a++L +gD+vvF+  g 
  BGIOSGA014036-PA 125 AKQLTQSDANNGGGFSVPRLCADHIfpalnldDDPPVQS--LTMGDLQGDSWEFRHIYRGTPRRHLLTTGWSKFVNAKQLVAGDTVVFMWCGA 215
                       69*******************9777*****976676675..************************************************8865 PP

                       ..SEE..EEEEE-S CS
                B3  88 ..sefelvvkvfrk 99 
                          e++l+v+v+r+
  BGIOSGA014036-PA 216 paPERKLLVGVRRA 229
                       57999999999986 PP
2Auxin_resp45.53.2e-16252327174
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkma.fetedsserrl.sGtvvgvsdldpvrW 74 
                       a++ a+++ +F+v+Y+Pr ++ eFvv++ +v k l++++  Gm+++ + +e ed ++  +  Gt + +++ +  r 
  BGIOSGA014036-PA 252 AVRLAAEQAAFRVTYYPRHGAGEFVVPRVEVDKGLTTPWRCGMQVRAQvMEAEDTRRLAWlNGTLTNLRHQQIWRT 327
                       5778999***************************************9758***************99988666444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.09E-26113233IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-31116238IPR015300DNA-binding pseudobarrel domain
CDDcd100174.21E-18122228No hitNo description
PROSITE profilePS5086312.026124230IPR003340B3 DNA binding domain
SMARTSM010191.4E-15124230IPR003340B3 DNA binding domain
PfamPF023621.4E-21125229IPR003340B3 DNA binding domain
PfamPF065075.1E-12252332IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MARPPAATAP PPPPPPPPPP PPPIDRLVWL ACAAPLSRIP VVGTQVSYFP EGHAEQCPAP  60
LPDPLPSAHR FFLCTITAVD LSADTTTGEP YATISLLPLR HDAPAPAPAA AELAEAESQE  120
FRYYAKQLTQ SDANNGGGFS VPRLCADHIF PALNLDDDPP VQSLTMGDLQ GDSWEFRHIY  180
RGTPRRHLLT TGWSKFVNAK QLVAGDTVVF MWCGAPAPER KLLVGVRRAA RYSGESACNA  240
RGRVQPQEVM EAVRLAAEQA AFRVTYYPRH GAGEFVVPRV EVDKGLTTPW RCGMQVRAQV  300
MEAEDTRRLA WLNGTLTNLR HQQIWRTLEV EWDASAASSS MKNRFVNPWQ VQPVDFPPLP  360
MGLKISNNNI SAPVCNGDSL LVPPILMHPQ PQPPADIQGA RHNNGHAYAD IPSSSTPSMV  420
RTQQLFPRGL QILVPHTDIV TPQNGSPPDN PVNTPLSASD GMKTIQLFGV TITSPVQGDT  480
NGAFASAQVN QVPEGVDDET ATEEASDTSL PDSLTNGHNQ DGARL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A6e-542635521356Auxin response factor 1
4ldy_B6e-542635521356Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.561500.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329946580.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1094490.0AK109449.1 Oryza sativa Japonica Group cDNA clone:001-113-A09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634416.10.0auxin response factor 13
SwissprotQ7XSS90.0ARFM_ORYSJ; Auxin response factor 13
TrEMBLA2XZ930.0A2XZ93_ORYSI; Auxin response factor
TrEMBLQ00RL90.0Q00RL9_ORYSA; Auxin response factor
STRINGOBART04G30660.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113553137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-75auxin response factor 17
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]