PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA013417-PA | ||||||||
Common Name | OsI_13207 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | TCP | ||||||||
Protein Properties | Length: 321aa MW: 33988.4 Da PI: 7.8297 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 157.9 | 5.8e-49 | 45 | 207 | 1 | 136 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 aa++kdrhski+T++g+RdRR+Rls+++a++fF+Lqd+LGfdk+skt++WLl+++k+ai e++++ +++s c e++sss s++ ++++ BGIOSGA013417-PA 45 AAARKDRHSKISTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNMSKAAIREIMSD--DASSVCeEDGSSSLSVDGKQQQhsnp 135 589**************************************************************..66667887777777776444444567 PP TCP 89 ........................kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136 k +++aa++k++++ a+++ ++kesrakar+rarert+ek+r+++++ BGIOSGA013417-PA 136 adrgggagdhkgaahghsdgkkpaKPRRAAANPKPPRRLANAHPVPDKESRAKARERARERTKEKNRMRWVT 207 88899999999999*********77777777**************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.3E-45 | 47 | 203 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.132 | 48 | 106 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 12.264 | 183 | 200 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048831 | Biological Process | regulation of shoot system development |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MHPFMDLELE PHGQQLAAAE EDGAGGQGVD AGVPFGVDGA AAAAAAARKD RHSKISTAGG 60 MRDRRMRLSL DVARKFFALQ DMLGFDKASK TVQWLLNMSK AAIREIMSDD ASSVCEEDGS 120 SSLSVDGKQQ QHSNPADRGG GAGDHKGAAH GHSDGKKPAK PRRAAANPKP PRRLANAHPV 180 PDKESRAKAR ERARERTKEK NRMRWVTLAS AISVEAATAA AAAGEDKSPT SPSNNLNHSS 240 STNLVSTELE DGSSSTRHNG VGVSGGRMQE ISAASEASDV IMAFANGGAY GDSGSYYLQQ 300 QHQQDQWELG GVVYANSRHY C |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.13012 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32992292 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the axillary bud of the first formed leaf node (PubMed:17655651). Expressed in axillary buds, shoot apical meristem, young leaves, vascular tissues and the tips of crown roots (PubMed:20547591). {ECO:0000269|PubMed:17655651, ECO:0000269|PubMed:20547591}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that functions as a negative regulator of lateral branching, presumably through its expression in axillary buds (PubMed:12581309, PubMed:20547591). Involved in the fine tuning of shoot branching. May function as an integrator of multiple signaling pathways to regulate the development of axillary buds. Works partially downstream of strigolactones to inhibit bud outgrowth (PubMed:20547591). Binds to MADS57 to suppress the negative regulation of D14 by MADS57 and balance the expression of D14 for tillering (PubMed:23463009). {ECO:0000269|PubMed:12581309, ECO:0000269|PubMed:20547591, ECO:0000269|PubMed:23463009}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630237.1 | 0.0 | transcription factor TB1-like | ||||
Swissprot | Q8LN68 | 0.0 | TB1_ORYSJ; Transcription factor TB1 | ||||
TrEMBL | A2XL63 | 0.0 | A2XL63_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA03G32600.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7253 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 4e-23 | TCP domain protein 12 |