PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA013132-PA
Common NameOsI_12632
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 510aa    MW: 58296.6 Da    PI: 9.3518
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA013132-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.5e-15361171198
                       HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        +++ +++p kf++++gg+   s t++l++++g  + v++  +k+++++vl+ GW+ Fv+a++++e+D+++F+++++s+f   v +f+
  BGIOSGA013132-PA  36 DSRRSMIMPCKFVNHFGGD--FSGTIKLQSPNGILYVVEV--TKCKNKTVLRCGWEAFVDAHHIEENDSLLFRRVENSRF--EVLIFD 117
                       45566999*****888999..7779***************..*******************************8888888..888887 PP
2B341.62.2e-132253071798
                       E--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEEEE- CS
                B3  17 vlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvvkvfr 98 
                       v++  +ae h   +++s+t+tl+   ++++W  ++  rk  ++ +l++ W eFvk+n+++e D++vF  +++  ++f+++v+++r
  BGIOSGA013132-PA 225 VISFCYAEVHF--PHKSVTVTLQRpCKSKKWHPRFYKRKDARMNILRGSWVEFVKDNRVQEQDICVFVPTKDarRNFTFTVHLLR 307
                       33333344443..56899******5677*******77888889*************************66442577888887776 PP
3B347.33.8e-15412495790
                       .-HHHHT...T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                B3   7 psdvlks...grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                       +s+v +s   ++l l  +fa++  ++ ++  + ++ +++g++W   +++r + +r ++ +GW +Fv++n+L++gD+++F+++ +++ 
  BGIOSGA013132-PA 412 KSNVERSaarCQLELGARFAAAVHLPDRR--QTVVLQRRGERWATVMQIRSGTRRLLI-SGWHRFVRDNRLRVGDICLFEFKTHERW 495
                       455554455599********999888655..3666778*********88888877655.5********************8755444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.94E-2322121IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.2E-2024120IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.19626119IPR003340B3 DNA binding domain
CDDcd100173.05E-1928117No hitNo description
SMARTSM010194.9E-1029119IPR003340B3 DNA binding domain
PfamPF023623.6E-1437117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-19200307IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-18201307IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-17208307No hitNo description
SMARTSM010190.0022208309IPR003340B3 DNA binding domain
PROSITE profilePS5086310.701209309IPR003340B3 DNA binding domain
PfamPF023621.4E-11224307IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-20398501IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-18399502IPR015300DNA-binding pseudobarrel domain
CDDcd100173.81E-15404506No hitNo description
SMARTSM010190.0016406508IPR003340B3 DNA binding domain
PROSITE profilePS5086311.843409503IPR003340B3 DNA binding domain
PfamPF023621.0E-12420496IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MAGSGSCMKK SCVCCQKYLE HLDGKMNCFV RRMTADSRRS MIMPCKFVNH FGGDFSGTIK  60
LQSPNGILYV VEVTKCKNKT VLRCGWEAFV DAHHIEENDS LLFRRVENSR FEVLIFDSDD  120
CEKVFSCAGI RNTCKSIQEK SSSSCDDTAE SSESEGFARN QKGSFSHRRK TANLASSSED  180
SGKSYLSEFQ KEKVDALIQE IQPETTAFVA IMRKSNVQLP TPFLVISFCY AEVHFPHKSV  240
TVTLQRPCKS KKWHPRFYKR KDARMNILRG SWVEFVKDNR VQEQDICVFV PTKDARRNFT  300
FTVHLLRVAA AYSRGGTGVD RAGSSLGRTD VKSASEISIK EEPIDQEENI SSRNRYGVSD  360
ESEEDEDSEG PAHPPYIVPC KSRLSRLQKK IVEEKVRSIQ SKFPVYVAIM KKSNVERSAA  420
RCQLELGARF AAAVHLPDRR QTVVLQRRGE RWATVMQIRS GTRRLLISGW HRFVRDNRLR  480
VGDICLFEFK THERWRLTMA VHAIFREQCC
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379890220.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1193990.0AK119399.1 Oryza sativa Japonica Group cDNA clone:001-132-D12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633049.10.0B3 domain-containing protein Os03g0619600
RefseqXP_015633050.10.0B3 domain-containing protein Os03g0619600
SwissprotQ6AV220.0Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBLB8AMK30.0B8AMK3_ORYSI; Uncharacterized protein
STRINGORGLA03G0243400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-17B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]