PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA012852-PA
Common NameOsI_12014
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-YA
Protein Properties Length: 310aa    MW: 33901.6 Da    PI: 9.4749
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA012852-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.12.6e-32156212158
         CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                       +ep++VNaKQy++Il+RRq+Rakle+++k   k+rkpylheSRh+hA++R+RgsgGrF
  BGIOSGA012852-PA 156 EEPIFVNAKQYNAILRRRQTRAKLEAQNKA-VKGRKPYLHESRHHHAMKRARGSGGRF 212
                       69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.9E-35154215IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.904155215IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.6E-27157212IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.2E-23158180IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860160180IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.2E-23189212IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MENHPVQCMA KTNYDFLARN NYPMKQLVQR NSDGDSSPTK SGESHQEASA VSDSSLNGQH  60
TSPQSVFVPS DINNNDSCGE RDHGTKSVLS LGNTEAAFPP SKFDYNQPFA CVSYPYGTDP  120
YYGGVLTGYT SHAFVHPQIT GAANSRMPLP VDPSVEEPIF VNAKQYNAIL RRRQTRAKLE  180
AQNKAVKGRK PYLHESRHHH AMKRARGSGG RFLTKKELLE QQQQQQQQKP PPASAQSPTG  240
RARTSGGAVV LGKNLCPENS TSCSPSTPTG SEISSISFGG GMLAHQEHIS FASADRHPTM  300
NQNHRVPVMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-21155217163NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.104400.0callus| flower| leaf| panicle| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329816180.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0621350.0AK062135.1 Oryza sativa Japonica Group cDNA clone:001-045-F05, full insert sequence.
GenBankEU8470110.0EU847011.1 Oryza sativa Japonica Group clone KCS132A05 CCAAT-binding transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631980.10.0nuclear transcription factor Y subunit A-4
RefseqXP_025879587.10.0nuclear transcription factor Y subunit A-4
RefseqXP_025879588.10.0nuclear transcription factor Y subunit A-4
TrEMBLB8AJQ60.0B8AJQ6_ORYSI; Uncharacterized protein
TrEMBLQ852G50.0Q852G5_ORYSJ; CCAAT-binding transcription factor
STRINGOS03T0411100-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.12e-37nuclear factor Y, subunit A6