PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA012049-PA
Common NameOsI_10388
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 548aa    MW: 57203.6 Da    PI: 8.5509
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA012049-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-056284123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++C+k F r  nL+ H r H
  BGIOSGA012049-PA 62 FVCEICNKGFQRDQNLQLHRRGH 84
                      89*******************88 PP
2zf-C2H213.20.00027138160123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC +C+k +  +s+ k H +t+
  BGIOSGA012049-PA 138 WKCDKCSKKYAVQSDWKAHTKTC 160
                       58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.38E-76184No hitNo description
Gene3DG3DSA:3.30.160.601.8E-56184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9496284IPR007087Zinc finger, C2H2
SMARTSM003550.0176284IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SMARTSM00355190103133IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.2E-4126159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.38E-7133158No hitNo description
SMARTSM00355140138158IPR015880Zinc finger, C2H2-like
PRINTSPR012177.4E-9215227No hitNo description
PRINTSPR012177.4E-9229245No hitNo description
PRINTSPR012177.4E-9262274No hitNo description
PRINTSPR012177.4E-9350367No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MEVETSSGTA ERGAGAGAQQ QPPPQPQPQP PAKKKRALPG MPDPDAEVIA LSPKTLLATN  60
RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRSGKEVRK RVYVCPEPTC VHHDPSRALG  120
DLTGIKKHFC RKHGEKKWKC DKCSKKYAVQ SDWKAHTKTC GSREYRCDCG TLFSRRDSFI  180
THRAFCDALA EESAKARAAP PPPADEDGTS ASAGAPPPQA PLPPPAPVPA PAPPPPPAAA  240
PAPAAQPEQR DRDAALDQFA TPAPPPVTAP PPPPVAAPND CVSSSSSGVA PTSQSLLSSM  300
FAPPSVAQAP QYADPIGVGA GGHQERAVPA KPPALCLAPN ASSSLFTAPV PADRQQFAPP  360
PPPSPSPHMS ATALLQKAAQ MGATSSSSSF LRCLGLDMSS SSSAPPSSSG QQQQHHHHHH  420
QETMQVPLPA SSLPEWPPRL QPEPSPMLSS GLGLGLPYDA TGGPVSLPEL MMGQSTLFSA  480
KPATLDFLGL GVSPTGASTS RGFPTFIQPI GGAVSLAGSA TVAAETFGAA HGGQANPWER  540
NPSSSPIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35134195364Zinc finger protein JACKDAW
5b3h_F1e-35134195364Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.612970.0callus| flower| leaf| panicle| root| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976004870.0
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}.
UniprotTISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632656.10.0protein indeterminate-domain 1
SwissprotQ9LVQ71e-136IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLB8AQ360.0B8AQ36_ORYSI; Uncharacterized protein
STRINGOS03T0197800-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.19e-97indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]