PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA011849-PA
Common NameOsI_09990
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GATA
Protein Properties Length: 219aa    MW: 23369.2 Da    PI: 9.02
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA011849-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA603.1e-19124157134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       C++C + +Tp+WR gpdg++tLCnaCG+++++ +
  BGIOSGA011849-PA 124 CTHCAVDETPQWRLGPDGPRTLCNACGVRFKSGR 157
                       *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.517118154IPR000679Zinc finger, GATA-type
SMARTSM004011.1E-15118168IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.23E-15120182No hitNo description
Gene3DG3DSA:3.30.50.105.3E-14122155IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.41E-16124172No hitNo description
PfamPF003201.5E-17124157IPR000679Zinc finger, GATA-type
PROSITE patternPS003440124149IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MVGDKDAAAL AGELTGDAGA SLNGFFDHTG LESAVVGEGQ GEGEEEEELE WLSNKDAFPS  60
VDTMAAEVES AAPGAPARAA VGPRTKGLRR RRRVTAPWSL APLLSRPRQA AAAAADAGAP  120
RRRCTHCAVD ETPQWRLGPD GPRTLCNACG VRFKSGRLFP EYRPANSPTF SPLLHSNSHR  180
RVMEMRLQSE EDASAASRVN AKARRAERAA ARLAGKDKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.64080.0callus| flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1160121000.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in stems, flowers and leaves. {ECO:0000269|PubMed:12139008}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves, less expressed in dark than in light. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2427350.0AK242735.1 Oryza sativa Japonica Group cDNA, clone: J090048J08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629220.11e-156GATA transcription factor 3
SwissprotQ8L4M61e-36GATA3_ARATH; GATA transcription factor 3
TrEMBLA0A0E0GGQ11e-155A0A0E0GGQ1_ORYNI; Uncharacterized protein
TrEMBLA2XCF91e-155A2XCF9_ORYSI; Uncharacterized protein
TrEMBLQ8H0361e-155Q8H036_ORYSJ; GATA zinc finger family protein
STRINGOS03T0145200-011e-156(Oryza sativa)
STRINGONIVA03G03270.11e-156(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.23e-34GATA family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]