PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA011251-PA | ||||||||
Common Name | OsI_10445 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 324aa MW: 34683.5 Da PI: 6.2514 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.3 | 8.9e-11 | 248 | 288 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq BGIOSGA011251-PA 248 RKRRERINERLKILQNLIPNG-----TKVDISTMLEEAVHYVKFLQ 288 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.856 | 238 | 287 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.42E-14 | 241 | 301 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-12 | 243 | 297 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-11 | 244 | 293 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.38E-12 | 247 | 292 | No hit | No description |
Pfam | PF00010 | 4.5E-8 | 248 | 288 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MEDSEAMAQL LGVQYFGNDQ EQQQPAAAAP PAMYWPAHDA ADQYYGSAPY CYMQQQQHYG 60 CYDGGSMVAG GDFFVPEEQL VADPSFMVDL NLEFEDQHGG DAGGAGSSAA AAAAATKMTP 120 ACKRKVEDHK DESCTDNVAR KKARSTAATV VQKKGNKNAQ SKKAQKGACS RSSNQKESNG 180 GGDGGNVQSS STNYLSDDDS LSLEMTSCSN VSSASKKSSL SSPATGHGGA KARAGRGAAT 240 DPQSLYARKR RERINERLKI LQNLIPNGTK VDISTMLEEA VHYVKFLQLQ IKLLSSDDMW 300 MFAPIAYNGV NVGLDLKISP PQQQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629469.1 | 0.0 | transcription factor bHLH85 | ||||
TrEMBL | B8AQF7 | 0.0 | B8AQF7_ORYSI; Uncharacterized protein | ||||
STRING | OS03T0205300-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11680 | 28 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 1e-45 | bHLH family protein |