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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
BGIOSGA010480-PA |
Common Name | OsI_011801, SHR2 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
GRAS |
Protein Properties |
Length: 603aa MW: 64215.8 Da PI: 6.3708 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
BGIOSGA010480-PA | genome | RIS | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 300.5 | 4e-92 | 189 | 602 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkf 93
+lL+ecA+av+ +d +++q+l++ l+elasp+gd q+la+yf+++L arl+ s++++ ++l++ ++++ s +++ + l f+e+sP+ f
BGIOSGA010480-PA 189 AQLLMECARAVAGRDSQRVQQLMWMLNELASPYGDVDQKLASYFLQGLFARLTTSGPRTLRTLATASDRNA-SFDSTRRTALkFQELSPWTPF 280
589************************************************************99988744.44444444446********** PP
GRAS 94 shltaNqaIleavege...................ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg...skeeleetge 163
+h++aN aIle++ ++ +r+Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v++ ++ ++ ++e+g+
BGIOSGA010480-PA 281 GHVAANGAILESFLEAaaagaaaasssssssstppTRLHILDLSNTFCTQWPTLLEALATRSsDDTPHLSITTVVPTAAPsaaAQRVMREIGQ 373
***********986655666677777888888888899************************8889********996655788999******* PP
GRAS 164 rLakfAeelgvpfefnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse. 251
rL+kfA+ +gvpf+f+++++ +l+dl+l +L++++ alaVn+v +l + rd+++ +++l+P+vv+vve+ead+ ++
BGIOSGA010480-PA 374 RLEKFARLMGVPFSFRAVHHAgDLADLDLAALDLREggaTAALAVNCVNALRGVA-------RGRDAFVASLRRLEPRVVTVVEEEADLAAPe 459
*****************97767**************8877899********9998.......5589********************9997767 PP
GRAS 252 ...........sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333
F++ f e l+++sa +dsle+++p++s+er ++Er+ +gr+iv++v+c +++ er+et+++W +r+++aGF+p+++se++
BGIOSGA010480-PA 460 adasseadtdaAFVKVFGEGLRFFSAYMDSLEESFPKTSNERLSLERA-VGRAIVDLVSCPASQSAERRETAASWARRMRSAGFSPAAFSEDV 551
89999999999*************************************.******************************************** PP
GRAS 334 akqaklllrkvksdgyrveee...........sgslvlgWkdrpLvsvSaWr 374
a+++++llr++k +g+++ + + ++l Wk++p+v++SaW+
BGIOSGA010480-PA 552 ADDVRSLLRRYK-EGWSMRDAggatddaagaaAAGAFLAWKEQPVVWASAWK 602
************.888988555556667777688899**************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0007275 | Biological Process | multicellular organism development |
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
Protein Sequence Length: 603 aa
Download sequence Send
to blast |
MDTLFRLVSL HHHHHHQHAA SPSPPDQPHK SYPSSRGSTS SPSSHHTHNH TYYHHSHSHY 60 NNNSNTNYYY QGGGGGGGGY YYAEEQQPAA YLEECGNGHQ FYMDEDFSSS SSSRQFHSGT 120 GAPSSAPVPP PPSATTSSAG GHGLFEAADF SFPQVDISLD FGGSPAVPSS SGAGAGAGAA 180 PSSSGRWAAQ LLMECARAVA GRDSQRVQQL MWMLNELASP YGDVDQKLAS YFLQGLFARL 240 TTSGPRTLRT LATASDRNAS FDSTRRTALK FQELSPWTPF GHVAANGAIL ESFLEAAAAG 300 AAAASSSSSS SSTPPTRLHI LDLSNTFCTQ WPTLLEALAT RSSDDTPHLS ITTVVPTAAP 360 SAAAQRVMRE IGQRLEKFAR LMGVPFSFRA VHHAGDLADL DLAALDLREG GATAALAVNC 420 VNALRGVARG RDAFVASLRR LEPRVVTVVE EEADLAAPEA DASSEADTDA AFVKVFGEGL 480 RFFSAYMDSL EESFPKTSNE RLSLERAVGR AIVDLVSCPA SQSAERRETA ASWARRMRSA 540 GFSPAAFSED VADDVRSLLR RYKEGWSMRD AGGATDDAAG AAAAGAFLAW KEQPVVWASA 600 WKP
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Functional Description ? help
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Source |
Description |
UniProt | Putative transcription factor involved in asymmetric cell division. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |