PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA010118-PA | ||||||||
Common Name | OsI_12866, WRKY60 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 142aa MW: 15004.4 Da PI: 8.2263 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 68.2 | 1.2e-21 | 48 | 105 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTE.EEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkv.veitYegeHnh 58 +Dgy+W+KYGqK +k+ + rsY+rC ++C +kkkve +dp + + ++Y g H+h BGIOSGA010118-PA 48 EDGYEWKKYGQKFIKNIQKNRSYFRCRDQRCGAKKKVEWHPHDPGLnLRVVYDGAHHH 105 7******************************************986479********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 18.2 | 42 | 108 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.92E-21 | 43 | 108 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.8E-24 | 44 | 108 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-21 | 47 | 107 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.0E-20 | 48 | 105 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MNNRGAGGGR GQGDDEEPTP TPPPAPPPET APSTVGGGGD GVQLVMPEDG YEWKKYGQKF 60 IKNIQKNRSY FRCRDQRCGA KKKVEWHPHD PGLNLRVVYD GAHHHGSPSS AAGEGGTSAA 120 AAANQYDLST QYFGGAGGPR SQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC133859 | 1e-125 | AC133859.4 Oryza sativa chromosome 3 BAC OSJNBa0075A22 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 1e-125 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 1e-125 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629815.1 | 1e-101 | probable WRKY transcription factor 20 isoform X2 | ||||
TrEMBL | Q0DPW0 | 1e-100 | Q0DPW0_ORYSJ; Os03g0657400 protein | ||||
TrEMBL | Q6IEM1 | 1e-100 | Q6IEM1_ORYSI; WRKY transcription factor 60 | ||||
STRING | OS03T0657400-00 | 1e-101 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10158 | 34 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 2e-12 | WRKY DNA-binding protein 57 |
Publications ? help Back to Top | |||
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