PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA009316-PA | ||||||||
Common Name | OsI_09496 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 633aa MW: 69715.7 Da PI: 4.3034 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158.8 | 2.2e-49 | 16 | 152 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya.........tgkrknratksgy 82 l+pGfrFhPtdeelv++yL++++ g++l++ ++i+evd+y++ePwdLp +++++++ +wyfF++ d+k + g+r+nrat +gy BGIOSGA009316-PA 16 LAPGFRFHPTDEELVSYYLRRRILGRRLRI-DAIAEVDLYRLEPWDLPslSRIRSRDAQWYFFARLDRKVTgagaggrggPGNRTNRATPRGY 107 579***************************.99***************5448999999***********99777777665567********** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wk+tgkd++v++ +g+lvg+kktLvf++grapkg++t+Wvmheyrl BGIOSGA009316-PA 108 WKTTGKDRDVHH-RGKLVGMKKTLVFHSGRAPKGQRTNWVMHEYRL 152 ************.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-55 | 11 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.48 | 16 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.6E-27 | 18 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 633 aa Download sequence Send to blast |
MSQSPPDSSS AAAVPLAPGF RFHPTDEELV SYYLRRRILG RRLRIDAIAE VDLYRLEPWD 60 LPSLSRIRSR DAQWYFFARL DRKVTGAGAG GRGGPGNRTN RATPRGYWKT TGKDRDVHHR 120 GKLVGMKKTL VFHSGRAPKG QRTNWVMHEY RLLDADGTQD LHVVCRIFQK NGSGPQNGAQ 180 YGAPYLEEDW EEEDDAIENM PASGAFAEMA AVTDTADEES TEEDGNFSLK TNDEPLQTQE 240 YQPEITPVKA QGSNEETNGG GYSCDVFSLD EILQEPENVC KNEEQNAIDD KFTIAELSGY 300 PRQDDGYVGE NGSVNWIDPS NGDNTNWPLR AYSTQNHVNG TLSADGFFDT VNGTNSYSGP 360 SDNQNLYLQD DGLTSSHQVG DNMPFYDASS NHKWVDGKDD YLNLNDLLYP PAENQPLFDA 420 GDDLMAYFDA TEDDFKFDIM GTEDSNSQLP DMSNFVQKDD NNNKFTLDGI SNTALYGASS 480 SGSHGNMYPD TAVPDMPMDD TVDKSFGKRL ASMLGSIPAP PAMASEFPPS TGKSVVPLSA 540 VNPSSSIRVT AGIIQLGGIT FTGSTERMQK NGDFNLLLSF TVEGDVSTKS IGFEPDTQMS 600 TTPMVLRSGM YLFFVSAMIL MLSYKVGLCI YSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-43 | 7 | 152 | 6 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.81164 | 0.0 | callus| flower| leaf| panicle| root| seed| stem| vegetative meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32987382 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102173 | 0.0 | AK102173.1 Oryza sativa Japonica Group cDNA clone:J033086I18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624689.1 | 0.0 | NAC domain-containing protein 78 isoform X1 | ||||
TrEMBL | A2XB56 | 0.0 | A2XB56_ORYSI; Uncharacterized protein | ||||
STRING | ORGLA02G0329400.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12931 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 3e-59 | NAC domain containing protein 2 |