PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA007071-PA | ||||||||
Common Name | OsI_05985 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 259aa MW: 29042.2 Da PI: 5.0404 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 65.6 | 1.5e-20 | 6 | 96 | 1 | 79 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...lelee............vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lppGfrFhP+d+elvv+yL k+++ + + ++ +vd++k+ePwdLp+ + + kewyf+ +d+kya+g++++ k BGIOSGA007071-PA 6 LPPGFRFHPRDDELVVDYLSGKLRSGDggaA---SgggaagagcptpTLIDVDLNKCEPWDLPEIACIGGKEWYFYNLKDRKYARGHEQTERLK 96 79**********************9996650...23455555666556999************7666789**************9886654434 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-24 | 3 | 113 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 16.014 | 6 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-8 | 7 | 90 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MVEARLPPGF RFHPRDDELV VDYLSGKLRS GDGGAASGGG AAGAGCPTPT LIDVDLNKCE 60 PWDLPEIACI GGKEWYFYNL KDRKYARGHE QTERLKSVQY MQEGWVLCRV FYKSRTEAVA 120 APTMESTLPP RYINGGTSRS PLAPLVDSSI SFNHGGYEEV LPCFSSSHHQ QPSPASMNAS 180 AAADDDQDYH HLSEGQRHYS DKKMMRDVQN DQVTTRFDGH LAVKREMSLK KDLSEDEQVE 240 DYYCLTDNGS SETWNFFQQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-20 | 2 | 88 | 11 | 84 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004863 | 0.0 | AP004863.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0023I17. | |||
GenBank | AP005804 | 0.0 | AP005804.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0085K21. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624259.1 | 1e-150 | NAC domain-containing protein 21/22 isoform X2 | ||||
TrEMBL | B8AI87 | 0.0 | B8AI87_ORYSI; Uncharacterized protein | ||||
STRING | OGLUM02G04830.1 | 1e-135 | (Oryza glumipatula) | ||||
STRING | OMERI02G05830.1 | 1e-137 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17534 | 9 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12977.1 | 2e-29 | NAC family protein |