PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA006916-PA
Common NameOsI_06291
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 296aa    MW: 31630.6 Da    PI: 10.4703
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA006916-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.91.3e-14107168162
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                       +ke kr +r+ +NR++A+  R+RKka++  Le kvk Le++N++L ++ ++l++e + l++ 
  BGIOSGA006916-PA 107 DKEHKRLKRLLRNRVSAQQARERKKAYLNDLEVKVKDLEKKNSELEERFSTLQNENQMLRQI 168
                       5899*****************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.5E-15107171IPR004827Basic-leucine zipper domain
PfamPF001701.5E-13108169IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.461109172IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.81E-13111169No hitNo description
Gene3DG3DSA:1.20.5.1702.1E-16111171No hitNo description
CDDcd147042.36E-21112163No hitNo description
PROSITE patternPS000360114129IPR004827Basic-leucine zipper domain
SuperFamilySSF498991.8E-15206285IPR013320Concanavalin A-like lectin/glucanase domain
Gene3DG3DSA:2.60.120.2001.9E-15207281IPR013320Concanavalin A-like lectin/glucanase domain
PfamPF001394.0E-16207279IPR001220Legume lectin domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0030246Molecular Functioncarbohydrate binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MQEQATSSRP SSSERSSSSG GHHMEIKEGK EAPLRSLPLP FLDFHFTVPL SGMESDEEIG  60
RVPELGLEPG GASTSGRAAG GGGGGAERAQ SSTAQASARR RGRSPADKEH KRLKRLLRNR  120
VSAQQARERK KAYLNDLEVK VKDLEKKNSE LEERFSTLQN ENQMLRQILK NTTVSRRGPV  180
LLKIPKSGLR EAAPAGCGGL REAEGDEKFV LNGFTAANLS FDGMATVTPN GLLMLTNGTN  240
QLKGHAFFPA PLQFHRMPNS TAMQSFSTAF VIGIISAFED QGSGSPAAAG GSGRAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2oqq_A4e-14132171342Transcription factor HY5
2oqq_B4e-14132171342Transcription factor HY5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623711.13e-76transcription factor HY5
TrEMBLB8ADU50.0B8ADU5_ORYSI; Uncharacterized protein
STRINGONIVA02G09400.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140838111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.15e-38bZIP family protein