PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA006734-PA
Common NameOsI_06668
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 298aa    MW: 31745.2 Da    PI: 5.0307
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA006734-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_152.51.1e-16142193458
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                       +kr rr+ +NRe+ArrsR+RK+a ++ Le+ v++L +eN +L k+l    +  ++
  BGIOSGA006734-PA 142 VKRMRRMVSNRESARRSRKRKQAHLADLETQVDQLRGENASLFKQLT---DANQQ 193
                       79**************************************9995554...44443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.2E-17139203IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.185141193IPR004827Basic-leucine zipper domain
PfamPF001702.8E-14142191IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.94E-13142194No hitNo description
Gene3DG3DSA:1.20.5.1701.6E-13143194No hitNo description
CDDcd147022.46E-23144194No hitNo description
PROSITE patternPS000360146161IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MKKCPSELNF EAFFHGERGE DDADAAADQK PGGGPHPPPF AMFSAADLSS FGFADSVTST  60
ITGVIPNHIW PQSQSLNARH PAVYTIESQS SICAAASPTS ATTLNMKESQ TLGGTSGSDS  120
DSESLLDIEG GPCEQSTNPL DVKRMRRMVS NRESARRSRK RKQAHLADLE TQVDQLRGEN  180
ASLFKQLTDA NQQFTTAVTD NRILKSDVEA LRVKVKMAED MVARGALSCG LGHLGGLSPA  240
LNPRQGACRV PDVLTGLDYA GDDPFTGLSP PEQVQMPGGG EVGDAWGWDN HSNGAMSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155161RRSRKRK
2155162RRSRKRKQ
3157162SRKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.495140.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO5564080.0
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in developing seeds from 10 to 30 days after flowering (DAF). {ECO:0000269|PubMed:11133985}.
UniprotTISSUE SPECIFICITY: Expressed in developing endosperm, especially in aleurone layer cells. {ECO:0000269|PubMed:7919992}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:7919992}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0706740.0AK070674.1 Oryza sativa Japonica Group cDNA clone:J023063K11, full insert sequence.
GenBankRICRITA1A0.0L34551.1 Oryza sativa transcriptional activator protein (RITA-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625526.10.0bZIP transcription factor RISBZ3-like isoform X1
SwissprotQ6ETX00.0RSBZ3_ORYSJ; bZIP transcription factor RISBZ3
TrEMBLB8AFB80.0B8AFB8_ORYSI; Uncharacterized protein
STRINGOS02T0266800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.16e-40basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Izawa T,Foster R,Nakajima M,Shimamoto K,Chua NH
    The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development.
    Plant Cell, 1994. 6(9): p. 1277-87
    [PMID:7919992]