PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA006294-PA
Common NameOsI_07577
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 508aa    MW: 57806.6 Da    PI: 8.9646
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA006294-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.71.6e-2284159176
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkw 76 
                       +fY+ YA ++GFsvr+++ +ks+++geit+r+fvCs+eg+++++k++ +++r++++ trtgC+a+l++++++ ++k+
  BGIOSGA006294-PA  84 EFYRYYAWKLGFSVRREYANKSRKTGEITSRKFVCSREGFKAPDKRT-NHTRTPQPDTRTGCHANLVIRRKNdTSKY 159
                       6*******************************************999.*********************99865555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575135No hitNo description
PfamPF031011.0E-1984159IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.46244280IPR007527Zinc finger, SWIM-type
PfamPF044348.9E-6251277IPR007527Zinc finger, SWIM-type
SMARTSM005754.5E-7255282IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MRAELVAVGE LKQAHDAVAC GGVGSSASHA AAAACRQRFE ILRDGNTAVE DSEAGPCIPR  60
VQAATGDYTP WLGQEFASEH EAYEFYRYYA WKLGFSVRRE YANKSRKTGE ITSRKFVCSR  120
EGFKAPDKRT NHTRTPQPDT RTGCHANLVI RRKNDTSKYE HLKKLVNDRR YIELEVEFSS  180
RLKLPDFKIR APILRQASEA YTGMIFQIFQ EEYEEFQSAY IVTRDESGPS REYIVAILEK  240
ERRYKVHGNP SEQTVTCSCR KFETLGFLCS HALKVLDTMD IKYMPDRYIL KRWAKYGRCL  300
TAPQVEGRKV QADTTLEFSS RYEYLCPVYV RLVARASECE ESYRVLDQCS VELGKKIEEI  360
LQKQTSIDAS APQSDIEDVT ISLSANGTDN ESERALDYSS STRPKRRKKK GRNAKSQRKS  420
CIEKGLQKTK KVQPEQSPIQ YTMLDATQPG NVLFQGLDIS NPFPMGQLNY GGVQPQPGLC  480
PSLPTVSRVL SIACYTLFDK KWRPLHHI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1009770.0callus| flower| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379914780.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1218550.0AK121855.1 Oryza sativa Japonica Group cDNA clone:J033102F24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627312.10.0protein FAR-RED IMPAIRED RESPONSE 1 isoform X3
RefseqXP_015627313.10.0protein FAR-RED IMPAIRED RESPONSE 1 isoform X3
RefseqXP_015627314.10.0protein FAR-RED IMPAIRED RESPONSE 1 isoform X3
RefseqXP_015627315.10.0protein FAR-RED IMPAIRED RESPONSE 1 isoform X3
RefseqXP_015627317.10.0protein FAR-RED IMPAIRED RESPONSE 1 isoform X3
RefseqXP_015627318.10.0protein FAR-RED IMPAIRED RESPONSE 1 isoform X3
TrEMBLA2X5U10.0A2X5U1_ORYSI; Uncharacterized protein
STRINGORGLA02G0169200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15895914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.22e-17FAR1 family protein