PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA005529-PA
Common NameOsI_09101
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GeBP
Protein Properties Length: 319aa    MW: 34863.1 Da    PI: 4.4238
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA005529-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57349.21.5e-15137228298
            DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                       +f+r+ws eDe+ +L +l   + ++g  +   +da++ ++ +s++ + + +++l  K+  LK++++   kk  +g+    sk hd+  ++lsk
  BGIOSGA005529-PA 137 AFHRIWSTEDEVRILEALAAHRREHG--SLPQTDALIATLAGSLDNTgYGRKELQGKVSTLKRRYESTAKK--KGDL--PSKGHDRRLYDLSK 223
                       699******************99999..678899**********8653899******************99..5554..5799********** PP

            DUF573  94 kiWgs 98 
                       ++Wgs
  BGIOSGA005529-PA 224 SVWGS 228
                       ***95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.1E-21138227IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAPKRPTPPP PPPPVASSEE TASGSDSDES EEEEEEEEES PLAQPAPVVS NKGAESDSSG  60
EEESEEEEEE DLVRSSATKS RDPPQENREE DDSSDEEEDE SSESEKAEAP PPPPLNPAPK  120
QGAEGNGPKV SSPKRQAFHR IWSTEDEVRI LEALAAHRRE HGSLPQTDAL IATLAGSLDN  180
TGYGRKELQG KVSTLKRRYE STAKKKGDLP SKGHDRRLYD LSKSVWGSEA AAAAANGTTT  240
APREFGEMCE LYPHLAEEVK LLEAAHPGLF KRDFGKLDDD KAHALDMKIK KQRIAEISVV  300
LRRGDLTKEV TKVLTELVE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.62280.0callus| flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329768410.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627254.11e-142probable tyrosine-protein phosphatase DSP2
TrEMBLA2XA270.0A2XA27_ORYSI; Uncharacterized protein
STRINGOS02T0771200-011e-167(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67292737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.16e-09DNA-binding storekeeper protein-related transcriptional regulator