PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA005501-PA
Common NameOsI_09144
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-YA
Protein Properties Length: 275aa    MW: 30094.6 Da    PI: 10.824
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA005501-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.92.9e-32102158158
         CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                       d p+YVN+KQy++Il+RRq Ra+le+++kl  k+rkpylheSRh+hA++R+Rg+gGrF
  BGIOSGA005501-PA 102 DGPIYVNPKQYHGILRRRQLRARLEAQNKL-VKTRKPYLHESRHRHAMKRARGTGGRF 158
                       57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.1E-36100161IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.361101161IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.5E-28104158IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.1E-23104126IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.1E-23135158IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MLLPSSSSYS YASKGDSFRR TVDGPMRSAL TFDNNHSVVP SQNIDYGQPM ACISYPYNDS  60
GSGVWASYSS RSVLYLKQFH PQIVGGGTSP RVPLPSLEIA DDGPIYVNPK QYHGILRRRQ  120
LRARLEAQNK LVKTRKPYLH ESRHRHAMKR ARGTGGRFLN TKQLQLQQQS HTTSTKTTTD  180
SQNSSGSVHL RLGGGAIGDQ TPFPFKAMDS QANIKRAAAS ASTFTVTSAA QKDDAFFDRH  240
GHHLSSFSGH FGQASAQGGV GSMHNGSQQR VPAMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-21102163263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142151RHRHAMKRAR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.766690.0callus| flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3185740.0AK318574.1 Oryza sativa Japonica Group cDNA, clone: J090045B17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623432.10.0nuclear transcription factor Y subunit A-4
TrEMBLB8AJG80.0B8AJG8_ORYSI; Uncharacterized protein
STRINGOS02T0776400-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132762833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.18e-22nuclear factor Y, subunit A5