PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA005001-PA | ||||||||
Common Name | OsI_04824 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GRAS | ||||||||
Protein Properties | Length: 275aa MW: 30505.7 Da PI: 6.717 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 209.4 | 2e-64 | 72 | 274 | 167 | 374 |
GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259 +Ae lg+ +ef+ + + le+l++++L v+ +Ea+a+n+vl+lh++++es + +vL+++++lsP+ +v+veq+a hn++ Fl rf+e BGIOSGA005001-PA 72 AYAEGLGMYLEFRG-INRGLESLHIDDLGVDADEAVAINSVLELHSVVKESRGALN---SVLQTIRKLSPRAFVLVEQDAGHNGPFFLGRFME 160 58999*********.799******************************88877777...8********************************* PP GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrv 351 al+yy+alfd+l+a lpr + r vE++ +g ei+nvv cega+r+erhe++ +Wr+r+++aGF++vp++ ++a+ l + + +dgy+v BGIOSGA005001-PA 161 ALHYYAALFDALDAALPRYDARRERVEQFHFGAEIRNVVGCEGAARVERHERADQWRRRMSRAGFQSVPIKMA--AKAREWLDENAgGDGYTV 251 **********************************************************************754..467777777777****** PP GRAS 352 eeesgslvlgWkdrpLvsvSaWr 374 +e+ +lvlgWk++p++++S+W+ BGIOSGA005001-PA 252 ADEKVCLVLGWKGKPVIAASCWK 274 **********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 31.39 | 1 | 255 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.9E-62 | 72 | 274 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MEMDKFSSSY QPSWPPAQAT VDVVGSVETP ARRAFQRVAS FFVQELLDRR ASAGAGPCEH 60 GVLHPAVVVR EAYAEGLGMY LEFRGINRGL ESLHIDDLGV DADEAVAINS VLELHSVVKE 120 SRGALNSVLQ TIRKLSPRAF VLVEQDAGHN GPFFLGRFME ALHYYAALFD ALDAALPRYD 180 ARRERVEQFH FGAEIRNVVG CEGAARVERH ERADQWRRRM SRAGFQSVPI KMAAKAREWL 240 DENAGGDGYT VADEKVCLVL GWKGKPVIAA SCWKC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 7e-28 | 73 | 273 | 182 | 378 | Protein SCARECROW |
5b3h_A | 7e-28 | 73 | 273 | 181 | 377 | Protein SCARECROW |
5b3h_D | 7e-28 | 73 | 273 | 181 | 377 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003791 | 0.0 | AP003791.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1065G12. | |||
GenBank | AP006757 | 0.0 | AP006757.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0551C06. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646199.1 | 1e-141 | DELLA protein RGL1 | ||||
Refseq | XP_025878199.1 | 1e-141 | DELLA protein GAI-like | ||||
TrEMBL | A0A0E0FX74 | 0.0 | A0A0E0FX74_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2WY20 | 0.0 | A2WY20_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA01G45910.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5640 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 9e-34 | RGA-like 1 |