PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | BGIOSGA004837-PA | ||||||||
Common Name | OsI_04509 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 384aa MW: 41165.6 Da PI: 5.5448 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 38.4 | 2.6e-12 | 300 | 344 | 5 | 49 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 +r+rr++kNRe+A rsR+RK+a++ eLe + L++eN +Lk+ BGIOSGA004837-PA 300 RRQRRMIKNRESAARSRARKQAYTVELEAELNYLKQENARLKEAE 344 79************************************9999543 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.2E-13 | 296 | 361 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.657 | 298 | 342 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 1.15E-23 | 300 | 341 | No hit | No description |
SuperFamily | SSF57959 | 3.38E-10 | 300 | 344 | No hit | No description |
Pfam | PF00170 | 7.3E-11 | 300 | 346 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 8.0E-13 | 300 | 343 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 303 | 318 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 384 aa Download sequence Send to blast |
MSKNMKVTDD QEVTSQERDQ SGGTKVGGEE EIAPLARQSS ILSLTLEELQ NSLCEPGRNF 60 GSMNMDEFVA NIWNAEEFQA TTGGCKGAME ETKVVDSGSG SGDAGGSGLC RQGSFSLPLP 120 LCQKTVEEVW AEINQAPAHT SAPASALQPH AGSGGVAAND RQLTLGEMTL EDFLVKAGVV 180 RGSFTGQAAM GSGMVNGPVN PMQQGQGDPM MFPVGPVNAM YPVMGDGMGY PGGYNGMAIV 240 PPPPPAQGAM VVVSPGSSDG MSAMTHADMM NCIGNGMMIE NGTRKRPHRE DGCAEKTVER 300 RQRRMIKNRE SAARSRARKQ AYTVELEAEL NYLKQENARL KEAEKTVLLT KKQMLVEKMM 360 EQSKEKMNAN RGGSQLRRSG SCMW |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.10541 | 0.0 | callus| flower| panicle |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves and panicles (PubMed:17604002). Expressed in seeds (PubMed:21055780). {ECO:0000269|PubMed:17604002, ECO:0000269|PubMed:21055780}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that possesses transactivation activity in yeast (PubMed:17604002, PubMed:21055780, PubMed:18236009). Involved in abscisic acid (ABA) signaling pathway. Binds to the G-box motif 5'-CACGTG-3' of TRAB1 gene promoter (PubMed:17604002). Involved in the regulation of pollen maturation. May act as negative regulator of salt stress response (PubMed:18236009). Together with PYL5, PP2C30 and SAPK2, is part of an ABA signaling unit that modulates seed germination and early seedling growth (PubMed:22071266). {ECO:0000269|PubMed:17604002, ECO:0000269|PubMed:18236009, ECO:0000269|PubMed:21055780, ECO:0000269|PubMed:22071266}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00294 | DAP | Transfer from AT2G36270 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) (PubMed:21055780, PubMed:18236009, PubMed:22071266). Induced by salt stress. Down-regulated by cold and drought stresses (PubMed:18236009). {ECO:0000269|PubMed:18236009, ECO:0000269|PubMed:21055780, ECO:0000269|PubMed:22071266}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF199631 | 0.0 | EF199631.1 Oryza sativa (japonica cultivar-group) bZIP-type transcription factor ABI5 isoform 2 (ABI5) mRNA, complete cds, alternatively spliced. | |||
GenBank | JQ001818 | 0.0 | JQ001818.1 Oryza sativa Japonica Group ABRE-binding bZIP transcription factor (OREB1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628684.1 | 0.0 | bZIP transcription factor ABI5 homolog | ||||
Swissprot | Q8RZ35 | 0.0 | ABI5_ORYSJ; bZIP transcription factor ABI5 homolog | ||||
TrEMBL | B8ACI3 | 0.0 | B8ACI3_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA04G25730.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3830 | 35 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G44460.1 | 1e-44 | bZIP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|