PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA004736-PA

Common Name

OsI_04303

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 223aa MW: 24140.1 Da PI: 6.4471

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA004736-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.7	5.5e-10	57	97	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri ++f Lr+l+P K++ +++Le+A++Y+k L BGIOSGA004736-PA 57 ARERRHRISDRFRVLRSLVPGG-----SKMETVSMLEQAIHYVKFL 97 699***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.919	48	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.97E-14	53	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.4E-12	54	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-12	54	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.89E-13	54	101	No hit	No description
Pfam	PF00010	2.8E-7	57	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MDPYHYENMH DPRGFPIHPQ PYHLHPTAGG LGEGRMRGGG RRRPGAKLST DPQSVAARER 60 RHRISDRFRV LRSLVPGGSK METVSMLEQA IHYVKFLKAQ VTLHQAALVQ HEEGCQHADV 120 AAAFAAADAD LALELNHRHG GAGDDDAGMT TLEMAPMQEA VGYGDGPAHQ MMQQALDPAG 180 QLMMGGAHQL PPLPCCVFVQ ETDPSCYSVC NVHGEESGAQ GSY

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in growing new meristem. Down-regulated in elongating new meristem. {ECO:0000269\|PubMed:13130077}.
Uniprot	TISSUE SPECIFICITY: Expressed in the boundary between the shoot apical meristem (SAM) and the region of new meristem formation. {ECO:0000269\|PubMed:13130077}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that seems to regulate organogenesis in postembryonic development. Involved in the regulation of shoot branching by controlling axillary meristem initiation. Functions in association with LAX2 to regulate the process of AM formation. Possesses transactivation activity in yeast (PubMed:21963665). {ECO:0000269\|PubMed:13130077, ECO:0000269\|PubMed:21963665}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015618581.2	1e-161	LOW QUALITY PROTEIN: transcription factor LAX PANICLE 1
Swissprot	Q7XAQ6	1e-157	LAX1_ORYSJ; Transcription factor LAX PANICLE 1
TrEMBL	A2WWM6	1e-162	A2WWM6_ORYSI; Uncharacterized protein
STRING	OGLUM01G39950.1	1e-163	(Oryza glumipatula)
STRING	ORUFI01G39410.1	1e-163	(Oryza rufipogon)
STRING	ONIVA01G41030.1	1e-163	(Oryza nivara)
STRING	OBART01G36050.1	1e-163	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8553	32	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01310.1	7e-26	APRATAXIN-like

Publications ? help Back to Top
Kaur P, et al. Genes controlling plant growth habit in Leymus (Triticeae): maize barren stalk1 (ba1), rice lax panicle, and wheat tiller inhibition (tin3) genes as possible candidates. Funct. Integr. Genomics, 2008. 8(4): p. 375-86 [PMID:18543009] Oikawa T,Kyozuka J Two-Step Regulation of LAX PANICLE1 Protein Accumulation in Axillary Meristem Formation in Rice. Plant Cell, 2009. 21(4): p. 1095-108 [PMID:19346465] Woods DP,Hope CL,Malcomber ST Phylogenomic analyses of the BARREN STALK1/LAX PANICLE1 (BA1/LAX1) genes and evidence for their roles during axillary meristem development. Mol. Biol. Evol., 2011. 28(7): p. 2147-59 [PMID:21297156] Tabuchi H, et al. LAX PANICLE2 of rice encodes a novel nuclear protein and regulates the formation of axillary meristems. Plant Cell, 2011. 23(9): p. 3276-87 [PMID:21963665] Gao ZY, et al. Dissecting yield-associated loci in super hybrid rice by resequencing recombinant inbred lines and improving parental genome sequences. Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14492-7 [PMID:23940322] Deshpande GM,Ramakrishna K,Chongloi GL,Vijayraghavan U Functions for rice RFL in vegetative axillary meristem specification and outgrowth. J. Exp. Bot., 2015. 66(9): p. 2773-84 [PMID:25788736] Sekhar S, et al. Spikelet-specific variation in ethylene production and constitutive expression of ethylene receptors and signal transducers during grain filling of compact- and lax-panicle rice (Oryza sativa) cultivars. J. Plant Physiol., 2015. 179: p. 21-34 [PMID:25817414] Mohanta TK,Mohanta N,Parida P,Bae H Mitogen Activated Protein Kinase (MPK) Interacts With Auxin Influx Carrier (OsAux/LAX1) Involved in Auxin Signaling in Plant. Biol Proced Online, 2015. 17: p. 13 [PMID:26526688] Sekhar S, et al. Identification and Characterization of Differentially Expressed Genes in Inferior and Superior Spikelets of Rice Cultivars with Contrasting Panicle-Compactness and Grain-Filling Properties. PLoS ONE, 2015. 10(12): p. e0145749 [PMID:26710230] Das K, et al. Comparative proteomics of the superior and inferior spikelets at the early grain filling stage in rice cultivars contrast for panicle compactness and ethylene evolution. J. Plant Physiol., 2016. 202: p. 65-74 [PMID:27450495]