PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA003347-PA | ||||||||
Common Name | OsI_01570 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 88aa MW: 10196.8 Da PI: 10.3814 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEde+l++++++ G g W++ ++ g+ R++k+c++rw +yl BGIOSGA003347-PA 14 RGRWTKEEDEKLARYIRENGEGAWRSMPKNAGLLRCGKSCRLRWINYL 61 8*******************************99************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.098 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 7.4E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.13E-21 | 15 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.87E-10 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-7 | 65 | 88 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MGRAPCCEKV GLRRGRWTKE EDEKLARYIR ENGEGAWRSM PKNAGLLRCG KSCRLRWINY 60 LRADLKRGNI SPQEEDIILN LHATLGNR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 156765314 | 1e-149 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP002871 | 1e-147 | AP002871.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0475H04. | |||
GenBank | AP002873 | 1e-147 | AP002873.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0552C05. | |||
GenBank | AP014957 | 1e-147 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 1e-147 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628164.1 | 2e-57 | myb-related protein P | ||||
Swissprot | P27898 | 3e-47 | MYBP_MAIZE; Myb-related protein P | ||||
TrEMBL | A0A0E0MV95 | 4e-56 | A0A0E0MV95_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2WNZ5 | 7e-57 | A2WNZ5_ORYSI; Uncharacterized protein | ||||
TrEMBL | B8A6S0 | 6e-56 | B8A6S0_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q9FP39 | 6e-56 | Q9FP39_ORYSJ; Os01g0305900 protein | ||||
STRING | ORUFI01G13920.1 | 6e-57 | (Oryza rufipogon) | ||||
STRING | OS01T0305900-01 | 9e-57 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 3e-48 | myb domain protein 12 |