PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA002846-PA | ||||||||
Common Name | DREB2A, ERF40, OsI_000512 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 284aa MW: 31814.6 Da PI: 5.78 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.5 | 7.8e-19 | 85 | 134 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p + r +r +lg+f ta eAa a+++a+++++g BGIOSGA002846-PA 85 AYRGVRQRT-WGKWVAEIREP---N-RgRRLWLGSFPTALEAAHAYDEAARAMYG 134 59****999.**********8...3.35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.0E-13 | 84 | 134 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-20 | 85 | 143 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.1E-33 | 85 | 148 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.825 | 85 | 142 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.2E-31 | 86 | 143 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.79E-30 | 86 | 144 | No hit | No description |
PRINTS | PR00367 | 6.8E-9 | 86 | 97 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-9 | 108 | 124 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MERGEGRRGD CSVQLCGIIE LPHWVRKKRT RRKSDGPDSI AETIKWWKEQ NQKLQEENSS 60 RKAPAKGSKK GCMAGKGGPE NSNCAYRGVR QRTWGKWVAE IREPNRGRRL WLGSFPTALE 120 AAHAYDEAAR AMYGPTARVN FADNSTDANS GCTSAPSLMM SNGPATIPSD EKDELESPPF 180 IVANGPAVLY QPDKKDVLER VVPEVQDVKT EGSNGLKRVC QERKTMEVCE SEGIVLHKEV 240 NISYDYFNVH EVVEMIIVEL SADQKTEVHE EYQEGDDGFS LFSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-14 | 86 | 141 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 1e-13 | 86 | 141 | 15 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.32760 | 0.0 | callus| leaf| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37991579 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00302 | DAP | Transfer from AT2G40340 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. | |||
GenBank | HM807364 | 0.0 | HM807364.1 Oryza sativa Indica Group DREB-like protein (DREB1) gene, complete cds. | |||
GenBank | JQ341059 | 0.0 | JQ341059.1 Oryza sativa Indica Group cultivar Pokkali dehydration responsive element binding protein 2a (DREB2A) mRNA, complete cds. | |||
GenBank | KU159741 | 0.0 | KU159741.1 Oryza glaberrima clone 1 DREB2A transcription factor gene, complete cds. | |||
GenBank | KU159742 | 0.0 | KU159742.1 Oryza glaberrima clone 2 DREB2A transcription factor gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878770.1 | 0.0 | dehydration-responsive element-binding protein 2A | ||||
Swissprot | A2WL19 | 0.0 | DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A | ||||
TrEMBL | A0A0E0FGQ2 | 0.0 | A0A0E0FGQ2_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G04630.5 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7315 | 35 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 5e-35 | ERF family protein |