PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA002595-PA

Common Name

OsI_00038

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

NAC

Protein Properties

Length: 331aa MW: 36676.8 Da PI: 6.3725

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA002595-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.8	5.4e-50	23	154	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+ +yL k++++ ++++ vi+evdiyk++Pw+Lp + + +++ ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk+ BGIOSGA002595-PA 23 LPPGFRFHPTDEELLLHYLGKRAAAAPCPA-PVIAEVDIYKYNPWELPaMaVFGESDGEWYFFSPRDRKYPNGVRPNRAAGSGYWKATGTDKP 114 79*************************9.89***********5334455666********************************* PP NAM 92 vlskkgel...vglkktLvfykgrapkgektdWvmheyrl 128 + +++++ g+kk Lvfy+gr pkg+kt+W+mheyrl BGIOSGA002595-PA 115 ISISETQQtvlLGVKKALVFYRGRPPKGTKTSWIMHEYRL 154 99844444559*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-60	17	198	IPR003441	NAC domain
PROSITE profile	PS51005	58.973	23	198	IPR003441	NAC domain
Pfam	PF02365	9.3E-26	24	154	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MTIDLQLPAA ACGDHHTAAG AGLPPGFRFH PTDEELLLHY LGKRAAAAPC PAPVIAEVDI 60 YKYNPWELPA MAVFGESDGE WYFFSPRDRK YPNGVRPNRA AGSGYWKATG TDKPISISET 120 QQTVLLGVKK ALVFYRGRPP KGTKTSWIMH EYRLANAAAS SSSSYTSNLK QLASSSSSSS 180 SSASMRLDEW VLCRIYKKKE ANQQLQHYID MMMDDDNDDE HNLQVQQQAQ SHRMPRPPSI 240 SDYLLDYSDD LPPSTDQTPS LHLGFTAVNE GNNKRHKTME EYYSISISTA EMLHASSSTS 300 NNKSTQINFS SIFEPQTPAA AMSSHNDDTS I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-66	23	204	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-66	23	204	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-66	23	204	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-66	23	204	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-66	23	204	20	174	NAC domain-containing protein 19
3swm_B	1e-66	23	204	20	174	NAC domain-containing protein 19
3swm_C	1e-66	23	204	20	174	NAC domain-containing protein 19
3swm_D	1e-66	23	204	20	174	NAC domain-containing protein 19
3swp_A	1e-66	23	204	20	174	NAC domain-containing protein 19
3swp_B	1e-66	23	204	20	174	NAC domain-containing protein 19
3swp_C	1e-66	23	204	20	174	NAC domain-containing protein 19
3swp_D	1e-66	23	204	20	174	NAC domain-containing protein 19
3ulx_A	2e-66	23	199	15	169	Stress-induced transcription factor NAC1
4dul_A	1e-66	23	204	17	171	NAC domain-containing protein 19
4dul_B	1e-66	23	204	17	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.802	0.0	callus\| root

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	297595893	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Increased expression during grain maturation. {ECO:0000269\|PubMed:17124321}.
Uniprot	TISSUE SPECIFICITY: Expressed in flag leaves, green spikes and peduncles. {ECO:0000269\|PubMed:17124321}.
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269\|PubMed:29760199}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-B2) and one extra pseudogene (NAM-B1) (PubMed:17124321). {ECO:0000269\|PubMed:17124321, ECO:0000269\|PubMed:22278768}.
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269\|PubMed:29760199}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015621004.1	0.0	NAC transcription factor 29
Swissprot	A0SPJ3	2e-78	NAMA1_TRITD; NAC transcription factor NAM-A1
Swissprot	K4BWV2	2e-78	NAP1_SOLLC; NAC domain-containing protein 1
TrEMBL	A2WJP0	0.0	A2WJP0_ORYSI; Uncharacterized protein
STRING	ONIVA01G00250.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1237	36	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	1e-70	NAC domain containing protein 47

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321] Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]