PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA002533-PA
Common NameOsI_00101
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 288aa    MW: 30005.7 Da    PI: 7.834
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA002533-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.81.1e-09205248755
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++ + RR+ri +++  L++l+P+      +K++ +++LekA++Y+k Lq
  BGIOSGA002533-PA 205 AAAKVRRERISERLKVLQDLVPNG-----TKVDLVTMLEKAINYVKFLQ 248
                       67799*****************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-14196258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.42E-12198252No hitNo description
PROSITE profilePS5088814.983198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-12199256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11204253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6205248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MMAAQASSKR GMLLPREAVL YDDEPSMAPL EILGYHGNGV GGGGCVDADY YYSWSGSSSS  60
SSSSVLSFDQ AAVGGGGGCA RQLAFHPGGD DDDCAMWMDA AAGAMVENTS VVAGGNSYCH  120
RLQFHGGGAG FGLASPGSSV VDNGLEIHES NVSKPPPPAA KKRACPSGEA RAAGKKQCRK  180
GSKPNKAASA SSPSPSPNKE QPQSAAAKVR RERISERLKV LQDLVPNGTK VDLVTMLEKA  240
INYVKFLQLQ VKVLATDEFW PAQGGKAPEL SQVKDALDAI LSSQHPNK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329937960.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085870.0AK108587.1 Oryza sativa Japonica Group cDNA clone:002-146-B03, full insert sequence.
GenBankHQ8588580.0HQ858858.1 Oryza sativa Japonica Group isolate UT1665 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643698.11e-172transcription factor bHLH83
TrEMBLB8ACW00.0B8ACW0_ORYSI; Uncharacterized protein
STRINGORGLA01G0007400.11e-173(Oryza glaberrima)
STRINGOBART01G00850.11e-173(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.13e-46ROOT HAIR DEFECTIVE6