PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA002288-PA

Common Name

OsI_00597

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bZIP

Protein Properties

Length: 384aa MW: 41044.5 Da PI: 10.2787

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA002288-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.1	6.9e-12	290	350	2	62
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 ke r +r+ +NR++A+ R+RKka++ eLe k+k Le N +L +++++l++e +l++ BGIOSGA002288-PA 290 KEQNRLKRLLRNRVSAQQARERKKAYMTELEAKAKDLELRNAELEQRVSTLQNENNTLRQI 350 78899***************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51384	9.958	12	130	IPR017927	Ferredoxin reductase-type FAD-binding domain
SuperFamily	SSF63380	2.69E-19	53	132	IPR017938	Riboflavin synthase-like beta-barrel
Pfam	PF00970	1.8E-16	55	129	IPR008333	Oxidoreductase, FAD-binding domain
CDD	cd06183	2.78E-82	64	218	No hit	No description
PRINTS	PR00406	2.1E-19	79	86	IPR001834	NADH:cytochrome b5 reductase (CBR)
Gene3D	G3DSA:2.40.30.10	1.1E-16	81	117	No hit	No description
PRINTS	PR00406	2.1E-19	115	129	IPR001834	NADH:cytochrome b5 reductase (CBR)
SuperFamily	SSF52343	1.1E-28	117	219	No hit	No description
Gene3D	G3DSA:3.40.50.80	1.3E-39	118	224	No hit	No description
PRINTS	PR00406	2.1E-19	138	157	IPR001834	NADH:cytochrome b5 reductase (CBR)
Pfam	PF00175	2.0E-24	139	224	IPR001433	Oxidoreductase FAD/NAD(P)-binding
PRINTS	PR00406	2.1E-19	176	187	IPR001834	NADH:cytochrome b5 reductase (CBR)
SMART	SM00338	1.6E-13	289	353	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.7E-10	290	351	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.185	291	354	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.88E-11	294	351	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.9E-16	294	353	No hit	No description
CDD	cd14704	6.17E-22	294	344	No hit	No description
PROSITE pattern	PS00036	0	296	311	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0055114	Biological Process	oxidation-reduction process
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016491	Molecular Function	oxidoreductase activity
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MAALLLRRLA GTHRGRVPLA AAAAVTGGAA LFCASSPPTI ALMEEKGEDA AAKVALNPDK 60 WLEFKLQEKA TVSHNSQLFR YTPISDPDSK GYFDLLIKVY PDGKMSQYFA SLKPGDVVEV 120 KGPIEKLRYS PNMKKQIGMI AGGTGITPML QVVRAILKNP DDNTQVSLIY ANVSPDDILL 180 KRELDRLASS YPNFKVFYTV DKPSNDWRGG VGYISKDMAL KGVESDEEIR RVPEMGGGGG 240 SASSGAGADE RQGKEDGKQQ GGGGGGAAAA GGGQEQAPPA RKRGRSAGDK EQNRLKRLLR 300 NRVSAQQARE RKKAYMTELE AKAKDLELRN AELEQRVSTL QNENNTLRQI LKNTTAHAGK 360 RGGGGGGKGG DGGGGGKKHH FTKS

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MAALLLRRLA GTHRGRVPLA AAAAVTGGAA LFCASSPPTI ALMEEKGEDA AAKVALNPDK  60
WLEFKLQEKA TVSHNSQLFR YTPISDPDSK GYFDLLIKVY PDGKMSQYFA SLKPGDVVEV  120
KGPIEKLRYS PNMKKQIGMI AGGTGITPML QVVRAILKNP DDNTQVSLIY ANVSPDDILL  180
KRELDRLASS YPNFKVFYTV DKPSNDWRGG VGYISKDMAL KGVESDEEIR RVPEMGGGGG  240
SASSGAGADE RQGKEDGKQQ GGGGGGAAAA GGGQEQAPPA RKRGRSAGDK EQNRLKRLLR  300
NRVSAQQARE RKKAYMTELE AKAKDLELRN AELEQRVSTL QNENNTLRQI LKNTTAHAGK  360
RGGGGGGKGG DGGGGGKKHH FTKS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2eix_A	7e-60	55	218	5	200	NADH-cytochrome b5 reductase
2eix_B	7e-60	55	218	5	200	NADH-cytochrome b5 reductase
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	365	373	GGKGGDGGG
2	367	376	KGGDGGGGGK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.53199	0.0	callus\| flower\| leaf\| panicle\| root\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32981347	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Desaturation and elongation of fatty acids. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT841887	0.0	CT841887.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C105P06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015621896.1	1e-145	NADH-cytochrome b5 reductase-like protein
Swissprot	P83291	1e-100	NB5R2_ARATH; NADH-cytochrome b5 reductase-like protein
TrEMBL	A2WL86	0.0	A2WL86_ORYSI; Uncharacterized protein
STRING	ORUFI01G05070.1	1e-147	(Oryza rufipogon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11260.1	1e-32	bZIP family protein

Publications ? help Back to Top
Kruft V,Eubel H,Jänsch L,Werhahn W,Braun HP Proteomic approach to identify novel mitochondrial proteins in Arabidopsis. Plant Physiol., 2001. 127(4): p. 1694-710 [PMID:11743114] Peltier JB, et al. Clp protease complexes from photosynthetic and non-photosynthetic plastids and mitochondria of plants, their predicted three-dimensional structures, and functional implications. J. Biol. Chem., 2004. 279(6): p. 4768-81 [PMID:14593120] Tamaoki M, et al. Transcriptome analysis of O3-exposed Arabidopsis reveals that multiple signal pathways act mutually antagonistically to induce gene expression. Plant Mol. Biol., 2003. 53(4): p. 443-56 [PMID:15010611] Tasseva G,de Virville JD,Cantrel C,Moreau F,Zachowski A Changes in the endoplasmic reticulum lipid properties in response to low temperature in Brassica napus. Plant Physiol. Biochem., 2004. 42(10): p. 811-22 [PMID:15596101] Noir S,Bräutigam A,Colby T,Schmidt J,Panstruga R A reference map of the Arabidopsis thaliana mature pollen proteome. Biochem. Biophys. Res. Commun., 2005. 337(4): p. 1257-66 [PMID:16242667] Bayer EM, et al. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Proteomics, 2006. 6(1): p. 301-11 [PMID:16287169] Kumar R,Wallis JG,Skidmore C,Browse J A mutation in Arabidopsis cytochrome b5 reductase identified by high-throughput screening differentially affects hydroxylation and desaturation. Plant J., 2006. 48(6): p. 920-32 [PMID:17227547] Jiang Y,Yang B,Harris NS,Deyholos MK Comparative proteomic analysis of NaCl stress-responsive proteins in Arabidopsis roots. J. Exp. Bot., 2007. 58(13): p. 3591-607 [PMID:17916636] Jamet E, et al. Recent advances in plant cell wall proteomics. Proteomics, 2008. 8(4): p. 893-908 [PMID:18210371] Tan YF,O'Toole N,Taylor NL,Millar AH Divalent metal ions in plant mitochondria and their role in interactions with proteins and oxidative stress-induced damage to respiratory function. Plant Physiol., 2010. 152(2): p. 747-61 [PMID:20018591] Duncan O, et al. Multiple lines of evidence localize signaling, morphology, and lipid biosynthesis machinery to the mitochondrial outer membrane of Arabidopsis. Plant Physiol., 2011. 157(3): p. 1093-113 [PMID:21896887] Aryal UK,Krochko JE,Ross AR Identification of phosphoproteins in Arabidopsis thaliana leaves using polyethylene glycol fractionation, immobilized metal-ion affinity chromatography, two-dimensional gel electrophoresis and mass spectrometry. J. Proteome Res., 2012. 11(1): p. 425-37 [PMID:22092075]