PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA002147-PA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 195aa MW: 22143.9 Da PI: 9.1071 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.5 | 4.2e-15 | 33 | 81 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT+eEd l ++ + +G ++W+++a++m+ +R++kqc++rw+++l BGIOSGA002147-PA 33 AWTPEEDACLERLARGYGFRHWRRVAEEMQpreRRRSPKQCRDRWRDHL 81 8*********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.194 | 26 | 85 | IPR017930 | Myb domain |
SMART | SM00717 | 6.4E-12 | 30 | 83 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-17 | 33 | 89 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-14 | 33 | 81 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.31E-12 | 33 | 81 | No hit | No description |
SuperFamily | SSF46689 | 1.01E-17 | 33 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.574 | 82 | 134 | IPR017877 | Myb-like domain |
SMART | SM00717 | 9.7 | 86 | 136 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.89E-5 | 88 | 144 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.1E-6 | 90 | 135 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
METSSSDFSS TTEVAATPSS AMRIILRIRL SPAWTPEEDA CLERLARGYG FRHWRRVAEE 60 MQPRERRRSP KQCRDRWRDH LARDVYHRPF TADDDAELAH LRLRGGGGDR WKDISRAAHC 120 RTSRAMRRRW RELRKSDAFL RALYWHPDQP VPPLLDDALS CSDVLDSSVA SYRGGCDAVA 180 GGGTIVAPGF ACFAA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP002092 | 0.0 | AP002092.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0031E09. | |||
GenBank | AP002093 | 0.0 | AP002093.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0466B10. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636830.1 | 1e-102 | transcription factor MYB3R-5 | ||||
TrEMBL | A0A0E0MSZ1 | 1e-138 | A0A0E0MSZ1_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G07580.1 | 1e-139 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8360 | 13 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 1e-16 | myb domain protein r1 |