PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA001951-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 489aa    MW: 54758.1 Da    PI: 5.1649
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA001951-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.24.7e-5191361128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       lppGf FhP+d el+++yLkkk++g+k+e  e+i+evdiyk+ePwdLp+   v +++++w+fF+ rd+ky++g+r+nrat +gyWk+tgkd++
  BGIOSGA001951-PA   9 LPPGFGFHPKDTELISHYLKKKIHGQKIEY-EIIPEVDIYKHEPWDLPAkcDVPTKDNKWHFFAARDRKYPNGSRSNRATVAGYWKSTGKDRA 100
                       79****************************.99***************5346667999*********************************** PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++  +++++g+kktLvf++gr p+g++t+W+mhey +
  BGIOSGA001951-PA 101 IKM-GKQTIGTKKTLVFHEGRPPTGRRTEWIMHEYYI 136
                       **9.99*****************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-593159IPR003441NAC domain
PROSITE profilePS5100555.579159IPR003441NAC domain
PfamPF023651.1E-2410135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MESLRDMVLP PGFGFHPKDT ELISHYLKKK IHGQKIEYEI IPEVDIYKHE PWDLPAKCDV  60
PTKDNKWHFF AARDRKYPNG SRSNRATVAG YWKSTGKDRA IKMGKQTIGT KKTLVFHEGR  120
PPTGRRTEWI MHEYYIDERE CQACPDMKDA YVLCRITKRN DWIPGNGNEL DNSDPHPEPY  180
DAPPSVISTE QLNLAAEPVV GVEAAPVTVA EPDGVTTSAI TANIPSPSDD INLDDWLNEL  240
FDPFFDPEQS LASADLSPDE QNVESSNVGA LAPKVEQDYS SPNENVVDDT EYLLPEDVYN  300
ILHPGTDDFN MLQNPLDQYP IQYATDVWSG IQKEELWSPQ ANAEPSQSNE AADNGIIRRY  360
RSMKTPETSV PQFKGKTQAK MRVGINKMAT SSSESINQTI KFENSGRLVE HQKNQAHYVA  420
STKRSDAGKP STELSSNRGF LRGIRNAFAG CSDARWNMIL VAGFAIGVAV VALHIGQRLG  480
LSQRDQQHT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-45616212172Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.43870.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166305040.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:10660065}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8308860.0CT830886.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109D13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649784.10.0NAC domain-containing protein 74
SwissprotQ7GCL70.0NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBLA0A0E0FJN60.0A0A0E0FJN6_ORYNI; Uncharacterized protein
STRINGONIVA01G12610.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75603847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.17e-67NAC domain containing protein 86
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]