PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA001729-PA
Common NameOsI_01754
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 570aa    MW: 60676.7 Da    PI: 4.4847
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA001729-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM76.65.6e-24391741127
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkya.tgkrknratksgyWkatgk 88 
                       +p+G+ F P+d el    L+ k+ +++    l++v+++++i++++P  L+ + + +ee+  +yfFs+r+ +++ + + ++r++k g+Wka+g 
  BGIOSGA001729-PA  39 MPVGCYFVPKDLELFAI-LRCKLVRSQlpGALNNVFEHIRILEFHPALLHeTYIGNEEDgYIYFFSRRQFATKaRTEAATRVAKGGTWKASGG 130
                       699************66.6666555552334456799************84455555553559999998776624567788999********* PP

               NAM  89 dkevlsk..kgelvglkktLvfy...kgrapkgektdWvmheyr 127
                       +k++ sk  +g +vg k t+vfy    + ++++ kt+W mhe++
  BGIOSGA001729-PA 131 SKTLRSKkvGGIDVGQKLTMVFYerrFEGDQNPIKTNWGMHEFT 174
                       ****998888899**********43313456678********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-3033198IPR003441NAC domain
PROSITE profilePS5100528.99539195IPR003441NAC domain
PfamPF023652.5E-1340174IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MAEQPLGGGG GGGGDGNNNG KWKGKEKVVP EYGKNRHGMP VGCYFVPKDL ELFAILRCKL  60
VRSQLPGALN NVFEHIRILE FHPALLHETY IGNEEDGYIY FFSRRQFATK ARTEAATRVA  120
KGGTWKASGG SKTLRSKKVG GIDVGQKLTM VFYERRFEGD QNPIKTNWGM HEFTKIIDGS  180
KNQLEDLAVY RLYKIKRKED EEPVNAAAAA SSTDEPSTSS ALSPPTPPRP LPDMAGPSSA  240
TPLLPLQLPD MTGPSSSTPL LPLQLLGLAG SSSAMSLPLP LQLPGLAGSS SAMSLPAQQM  300
PGMAGSSSAM PLPLSLPGLA GGMMSMADQA NMASTSQAST PSSELLQDWY DEFEITYGAV  360
APPSPSTISW EEPQSSPTGW WPSPNGEPVQ HDGYLGMAAN PTSYMLEHPL PTAAIPPEPM  420
TPPTSSPAPP PAVDNHHRLS PPHDAAGSNY NHPELAGYNG GVQAQHEHQH QPQEPQPALL  480
VDGEDGYGAI ADGDGDTQLG VAELDTERIA EMVNHIMDGE FEFKFEDNTV LKYNEVFPDD  540
DKVVAAPMMI DGGGDGDGAD GGDGGDPFDN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.179120.0leaf| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329761250.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033310.0AP003331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1088D01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651177.10.0NAC transcription factor NAM-B2 isoform X1
TrEMBLA2WPH70.0A2WPH7_ORYSI; Uncharacterized protein
STRINGOBART01G14190.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.12e-11NAC family protein