PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA001176-PA | ||||||||
Common Name | OsI_02926 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 144aa MW: 15068.8 Da PI: 4.088 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 22.7 | 2e-07 | 2 | 31 | 30 | 59 |
TT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 30 agCpvkkkversaedpkvveitYegeHnhe 59 +gC+++k vers p ++++tY eH h+ BGIOSGA001176-PA 2 KGCMARKMVERSPAKPGMLVVTYMAEHCHP 31 68**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 0.0065 | 1 | 32 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 12.782 | 1 | 33 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.4E-7 | 2 | 33 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-5 | 2 | 31 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-7 | 2 | 33 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MKGCMARKMV ERSPAKPGML VVTYMAEHCH PVPTQLNALA GTTRHKSAPT GDDDKPTSPG 60 PAAGRAAAGE GVVKCEDVDG NELSAMAADG GAEDTAAAAD DDGELWPEGM GLELDEFLGP 120 MDDDVFEFDH VLEDDGVLGR RLSL |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32996625 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111416 | 0.0 | AK111416.1 Oryza sativa Japonica Group cDNA clone:002-182-G03, full insert sequence. | |||
GenBank | AP002744 | 0.0 | AP002744.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0006C01. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY870601 | 0.0 | AY870601.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640600.1 | 6e-99 | WRKY transcription factor 22 | ||||
TrEMBL | B8ABZ6 | 7e-99 | B8ABZ6_ORYSI; Uncharacterized protein | ||||
TrEMBL | B9EY50 | 1e-97 | B9EY50_ORYSJ; Uncharacterized protein | ||||
TrEMBL | I1NPU0 | 1e-97 | I1NPU0_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q5ZEB2 | 1e-97 | Q5ZEB2_ORYSJ; DNA-binding protein WRKY3-like | ||||
TrEMBL | Q6IER9 | 3e-97 | Q6IER9_ORYSJ; WRKY transcription factor 12 | ||||
STRING | OS01T0624700-01 | 2e-98 | (Oryza sativa) | ||||
STRING | ORGLA01G0188000.1 | 2e-98 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4279 | 30 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52830.1 | 5e-16 | WRKY DNA-binding protein 27 |