PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA001046-PA
Common NameOsI_03213
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ARF
Protein Properties Length: 714aa    MW: 78248.1 Da    PI: 7.2593
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA001046-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.36.9e-24142243199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++p++ ae++      +++ + s++l+ +d++g +W++++iyr++++r++lt+GW++F + ++L +gD v+F   + 
  BGIOSGA001046-PA 142 FCKTLTASDTSTHGGFSVPRRAAEDCfppldySLQRP-SQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSGFINKKKLVSGDAVLFL--RG 231
                       99****************************9966654.569************************************************..44 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                       +++el+++v+r+
  BGIOSGA001046-PA 232 EDGELRLGVRRA 243
                       9999*****996 PP
2Auxin_resp108.38.2e-36268348182
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                       +aha++ ks+F+++YnPr s+seF+++++k+++++++++svGmRfk+++e+ed+serr +G+++g +++dp  W++SkW++L
  BGIOSGA001046-PA 268 VAHAVAVKSIFHIYYNPRLSQSEFIIPYWKFMRSFSQPFSVGMRFKLRYESEDASERRRTGIIIGSREADP-MWHGSKWKCL 348
                       799********************************************************************.9********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-39134246IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-43139279IPR015300DNA-binding pseudobarrel domain
CDDcd100175.70E-22140242No hitNo description
PROSITE profilePS5086313.281142244IPR003340B3 DNA binding domain
SMARTSM010191.4E-22142244IPR003340B3 DNA binding domain
PfamPF023627.1E-22142243IPR003340B3 DNA binding domain
PfamPF065071.7E-29268348IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MVGIDLNTVE EEEDEEEGGA TGTVTAPAEA RAGGAVCLEL WHACAGPVAP LPRKGSAVVY  60
LPQGHLEHLG AAPGPAAVAA VPPHVFCRVV DVSLHADAAT DEVYAQVSLV ADNEEVERRM  120
REGEDGEGED AVKRPARIPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYSLQRPSQ  180
ELVAKDLHGT EWRFRHIYRG QPRRHLLTTG WSGFINKKKL VSGDAVLFLR GEDGELRLGV  240
RRAAQLKNVS PFPALHNQIS STSSLSEVAH AVAVKSIFHI YYNPRLSQSE FIIPYWKFMR  300
SFSQPFSVGM RFKLRYESED ASERRRTGII IGSREADPMW HGSKWKCLVV KWDDDVECRR  360
PNGVSPWEIE LSGSVSGSHL STPHSKRLKS CFPQVNPDIV LPNGSVSSDF AESARFHKVL  420
QGQELLGLKT RDGTVNTASQ ATEARNFQYT DERSCSINMS NNILGVPRLG VKTPSGNPGF  480
SYHCSGFGES QRFQEVLQGQ EVFRPYRGGT LSDACIRGSG FRPPDGNHAS GAAFKWLAPQ  540
GCDHHGITTS VLPQASSPSS VLMFPQTSSK MPGLEYIYGC LDRNENSRHF KIGPTQDMAR  600
TDQTLRLWPH LISGKVLDEC TRNEKLHSPV GGAEHESNTN KCLNTNGCKI FGISLTEKAQ  660
AGDEVDCGNA SYHSRLQSLK PQMPKSLGSS CATVHEQRPV VGRVVDISAV NTMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-1113537818361Auxin response factor 1
4ldy_B1e-1113537818361Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.63670.0callus| flower| leaf| panicle| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO193520340.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00021PBMTransfer from AT2G33860Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712910.0AB071291.1 Oryza sativa OsETTIN2 mRNA for Arabidopsis ETTIN-like protein 2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647511.10.0auxin response factor 2 isoform X2
SwissprotQ0JKI90.0ARFB_ORYSJ; Auxin response factor 2
TrEMBLB8A7840.0B8A784_ORYSI; Auxin response factor
STRINGONIVA01G29290.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-158ARF family protein
Publications ? help Back to Top
  1. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]