PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA001035-PA | ||||||||
Common Name | OsI_03233 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | Trihelix | ||||||||
Protein Properties | Length: 332aa MW: 36018.5 Da PI: 10.1778 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 43.1 | 1.1e-13 | 18 | 104 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ e+ aL++a ++ +l+rg+l++p+W+ev++++ ++r r+ +qCk++ + l+k+yk+++++ s++ ++++l+ BGIOSGA001035-PA 18 CWSDGETAALVDAWGRRYVDLNRGSLRQPQWREVAEAVnarpgasARRRPPRTDIQCKNRVDTLKKKYKAERARGTP------SSWYFYRDLD 104 7*******************************************999999********************9998775......4588888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.8E-25 | 16 | 105 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MDGKPPPPNP NLPYREDCWS DGETAALVDA WGRRYVDLNR GSLRQPQWRE VAEAVNARPG 60 ASARRRPPRT DIQCKNRVDT LKKKYKAERA RGTPSSWYFY RDLDMLVGPT LSAAAAAGGG 120 GSAKKPSPPR GLPMMRRRLE SPSRSPSPPS PTPAVALPLP NYRQASNLPS AGLLFNKMAA 180 AAAAESDSED GYNNPNNNYE DDEDDGSQQS ASRSVSSRSG GVAAAGAGGG GVSSSKRKRG 240 GGGGGGFGEL ARAVETFAEM YERMEFAKQR HAEEMERQRI KFLKDLELKR MQAFVDVQLQ 300 LAKAKHRKHP DGATEMLMSL AALPFLSTPA YL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.6377 | 0.0 | callus| flower| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 156764765 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614545.1 | 0.0 | trihelix transcription factor ASIL2 | ||||
Swissprot | Q9LJG8 | 6e-31 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A0E0FQX4 | 0.0 | A0A0E0FQX4_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2WTP4 | 0.0 | A2WTP4_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1NQK3 | 0.0 | I1NQK3_ORYGL; Uncharacterized protein | ||||
STRING | ONIVA01G29560.1 | 0.0 | (Oryza nivara) | ||||
STRING | ORGLA01G0214300.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2065 | 32 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14180.1 | 2e-27 | sequence-specific DNA binding transcription factors |