PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA000812-PA
Common NameOsI_03771
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ARF
Protein Properties Length: 674aa    MW: 73965.5 Da    PI: 7.7414
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA000812-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.66.4e-25134235199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++p++ ae++       ++    s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F   +
  BGIOSGA000812-PA 134 FCKTLTASDTSTHGGFSVPRRAAEDCfppldhkQLR--PSQELVAKDLHGAKWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFL--R 222
                       99**************************99865444..4669************************************************..3 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                        +++el+++v+r+
  BGIOSGA000812-PA 223 GDDGELRLGVRRA 235
                       489999****997 PP
2Auxin_resp113.52e-37260340182
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                       +a++++++svF+++YnPra++se+vv+++k++k+++++v++GmRfk+++e+ed++err sG+++gvs++dp+rWp+SkWrsL
  BGIOSGA000812-PA 260 VADSLKHGSVFHICYNPRATASEYVVPYWKFVKSFNHPVCIGMRFKFHYESEDVNERR-SGMIAGVSEVDPIRWPGSKWRSL 340
                       578899****************************************************.9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-47118273IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-39129237IPR015300DNA-binding pseudobarrel domain
CDDcd100177.81E-23132234No hitNo description
PfamPF023626.2E-23134235IPR003340B3 DNA binding domain
PROSITE profilePS5086313.507134236IPR003340B3 DNA binding domain
SMARTSM010192.8E-24134236IPR003340B3 DNA binding domain
PfamPF065071.0E-30261340IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MGIDLNYTAS GGEEDAPAPA PVCRDLWHAC AGPVVSLPRR GSAVVYLPQG HLSAAGAGGR  60
IRGEVAVALP PHVACRVVDV ELCADAATDE VYARLALRAE GEVFERNLHG GGIEREDDME  120
DGDEERKSRM LHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDHKQLRP SQELVAKDLH  180
GAKWRFRHIY RGQPRRHLLT TGWSSFVNKK KLVSGDAVLF LRGDDGELRL GVRRATQLKN  240
EAIFKAFSSE SSKMRTLSAV ADSLKHGSVF HICYNPRATA SEYVVPYWKF VKSFNHPVCI  300
GMRFKFHYES EDVNERRSGM IAGVSEVDPI RWPGSKWRSL LVRWEDATDC NSQNRVSPWE  360
IEIVGGSISV AHSLSASSSK RTKLCPQGNL DVPALYGNGR PDSVETEKFP RVLQGQELMG  420
SRTHRVTCSP QSIDITKSKS FDAWRFLTDT RSCMLGSSTS RLPVQYSGYT HQSVSFGESI  480
GFPEVLQGQE ISQTVPPIQG MLPDACSAKS RYELKNYVCT PATMNGLSSA NEGYCLSLST  540
VPPSPPSSLM LYQTGVPQLE LASKNNDKSG NDSQPALRQH KLLSETSWDQ FKIGKASTPG  600
NATKPGNGGR EVDRTSCRLF GFSLTEKIIP TDKDGEKEVS YETDCQNPRM LDLFGYNCST  660
PGALHALCAA PLGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-1002236219353Auxin response factor 1
4ldy_B1e-1002236219353Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.342490.0callus| flower| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329823530.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0723300.0AK072330.1 Oryza sativa Japonica Group cDNA clone:J023039P13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634503.10.0auxin response factor 3 isoform X2
SwissprotQ5JMM10.0ARFC_ORYSJ; Auxin response factor 3
TrEMBLB8A9U30.0B8A9U3_ORYSI; Auxin response factor
STRINGOGLUM01G35360.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51132756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-152ARF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]