PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA000355-PA
Common NameOsI_04730
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 428aa    MW: 44537.1 Da    PI: 5.3411
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA000355-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.5e-05124146123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ C+k F ++   + H+r+H
  BGIOSGA000355-PA 124 FPCHVCSKEFGSRKAVHGHMRVH 146
                       89*******************99 PP
2zf-C2H216.72e-05317339123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ Cgk Fs+   L  H+r+H
  BGIOSGA000355-PA 317 HPCKTCGKEFSTGVALGGHMRKH 339
                       78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.0013123147IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.676124151IPR007087Zinc finger, C2H2
SMARTSM003550.0089124146IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.9E-9124146No hitNo description
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
SMARTSM003555264288IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280266288IPR007087Zinc finger, C2H2
SuperFamilySSF576676.9E-9312339No hitNo description
PROSITE profilePS5015711.219317344IPR007087Zinc finger, C2H2
PfamPF139124.1E-10317341IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.600.001317339IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.019317339IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280319339IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MVEDQEKSSS SPPVPPPPEE EEMEEGEIHP GGGGGGGYYD SGSETEDDDD RYVFQSRRDE  60
EEEEEGVNPA SKRRRLEDIL AETRGALPLP SPTPSSSGSE GTISDDHGDG IAGAADAPVA  120
RVAFPCHVCS KEFGSRKAVH GHMRVHQADK DKEKEPSLHL ALGWTSTGKR GANGNARAVT  180
VAFAPMEQAV GDDDGDARAI VLAPAAQPQP QPMVVAEAAN PPNQVADDNH RLPVPAAAPY  240
VGAAAAPARR RARPKRNAGQ GGPYRCSYPG CKGEYRTHQG LGGHVAGHIN REKQAAAAAQ  300
GGSGGGLGGG ARPEGNHPCK TCGKEFSTGV ALGGHMRKHY DPKKKKKHAG LVLTLSVAPP  360
TPAPAPSIAG AALPPAEVKA DVDEHEAEQV PMAPVSPPAE ARGNIVRIFG VDIEKPADEE  420
EQEGGSDV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17175KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881238.10.0zinc finger protein ZAT1-like
TrEMBLB8A7D00.0B8A7D0_ORYSI; Uncharacterized protein
STRINGONIVA01G44820.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139281224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.14e-09C2H2 family protein