PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI12G20080.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 178aa    MW: 20214.2 Da    PI: 10.3841
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI12G20080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.79.4e-1656106255
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +++G++++k +grW AeIrd    +  k  r ++g+f+taeeAa a++a +++l+g
  ORUFI12G20080.1  56 RFHGIHRRK-SGRWSAEIRD----NmiKGSRSWVGTFDTAEEAAWAYDAVARRLYG 106
                      689***999.7*********....77455************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.70356114IPR001471AP2/ERF domain
PfamPF008476.8E-1056106IPR001471AP2/ERF domain
SMARTSM003803.2E-2556120IPR001471AP2/ERF domain
CDDcd000183.81E-2056115No hitNo description
Gene3DG3DSA:3.30.730.104.9E-2456114IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-1956114IPR016177DNA-binding domain
PRINTSPR003671.2E-55768IPR001471AP2/ERF domain
PRINTSPR003671.2E-58096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MRGPCGCEEK LKTTVVVVLS DDDDDDDYEE EFRRTLIHIY TRKRRPTARK KQHRHRFHGI  60
HRRKSGRWSA EIRDNMIKGS RSWVGTFDTA EEAAWAYDAV ARRLYGPNAR TNFRIPPPPV  120
APLLPAPAVA NKKMDSKRKK PVVVAEMVAP AGVEPAAGEM APGNTIRKCI LYSHPRET
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL8375280.0AL837528.5 Oryza sativa chromosome 12, . BAC OSJNBb0062H20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0RJP11e-129A0A0E0RJP1_ORYRU; Uncharacterized protein
STRINGORUFI12G20080.11e-129(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156151014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.14e-11ERF family protein